This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5onj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:55, 13 December 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5onj' size='340' side='right'caption='[[5onj]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
<StructureSection load='5onj' size='340' side='right'caption='[[5onj]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5onj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ONJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ONJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5onj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ONJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ONJ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=GGL:GAMMA-L-GLUTAMIC+ACID'>GGL</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GGL:GAMMA-L-GLUTAMIC+ACID'>GGL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">B4417_0239 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5onj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5onj OCA], [https://pdbe.org/5onj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5onj RCSB], [https://www.ebi.ac.uk/pdbsum/5onj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5onj ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5onj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5onj OCA], [http://pdbe.org/5onj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5onj RCSB], [http://www.ebi.ac.uk/pdbsum/5onj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5onj ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/YNDL_BACSU YNDL_BACSU]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Vibrio subtilis ehrenberg 1835]]
+
[[Category: Bacillus subtilis]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Calvio, C]]
+
[[Category: Synthetic construct]]
-
[[Category: Morelli, C]]
+
[[Category: Calvio C]]
-
[[Category: Pastore, A]]
+
[[Category: Morelli C]]
-
[[Category: Ramaswamy, S]]
+
[[Category: Pastore A]]
-
[[Category: Rasheed, M]]
+
[[Category: Ramaswamy S]]
-
[[Category: Sutton, B]]
+
[[Category: Rasheed M]]
-
[[Category: Hydrolase]]
+
[[Category: Sutton B]]
-
[[Category: Pga-hydrolase]]
+

Current revision

YnDL in Complex with 5 amino acid (PGA) complex

PDB ID 5onj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools