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| | <StructureSection load='4cp8' size='340' side='right'caption='[[4cp8]], [[Resolution|resolution]] 2.50Å' scene=''> | | <StructureSection load='4cp8' size='340' side='right'caption='[[4cp8]], [[Resolution|resolution]] 2.50Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4cp8]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Psesd Psesd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4CP8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4CP8 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4cp8]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._ADP Pseudomonas sp. ADP]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4CP8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4CP8 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allophanate_hydrolase Allophanate hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.54 3.5.1.54] </span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4cp8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4cp8 OCA], [http://pdbe.org/4cp8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4cp8 RCSB], [http://www.ebi.ac.uk/pdbsum/4cp8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4cp8 ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4cp8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4cp8 OCA], [https://pdbe.org/4cp8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4cp8 RCSB], [https://www.ebi.ac.uk/pdbsum/4cp8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4cp8 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/ATZF_PSESD ATZF_PSESD]] Hydrolyzes allophanate to NH(3) and CO(2). Can also use malonamate, but with much lower efficiency.<ref>PMID:11544232</ref> <ref>PMID:15901697</ref> | + | [https://www.uniprot.org/uniprot/ATZF_PSESD ATZF_PSESD] Hydrolyzes allophanate to NH(3) and CO(2). Can also use malonamate, but with much lower efficiency.<ref>PMID:11544232</ref> <ref>PMID:15901697</ref> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Allophanate hydrolase]] | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Psesd]] | + | [[Category: Pseudomonas sp. ADP]] |
| - | [[Category: Balotra, S]] | + | [[Category: Balotra S]] |
| - | [[Category: French, L]] | + | [[Category: French L]] |
| - | [[Category: French, N]] | + | [[Category: French N]] |
| - | [[Category: Newman, J]] | + | [[Category: Newman J]] |
| - | [[Category: Peat, T S]] | + | [[Category: Peat TS]] |
| - | [[Category: Scott, C]] | + | [[Category: Scott C]] |
| - | [[Category: Atrazine breakdown pathway]]
| + | |
| - | [[Category: Hydrolase]]
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| Structural highlights
Function
ATZF_PSESD Hydrolyzes allophanate to NH(3) and CO(2). Can also use malonamate, but with much lower efficiency.[1] [2]
Publication Abstract from PubMed
The allophanate hydrolase from Pseudomonas sp. strain ADP, AtzF, provides the final hydrolytic step for the mineralization of s-triazines such as atrazine and cyanuric acid. Indeed, the action of AtzF provides metabolic access to two of the three nitrogens in each triazine ring. The X-ray structure of the N-terminal amidase domain of AtzF reveals that it is highly homologous to allophanate hydrolases involved in a different catabolic process in other organisms (i.e. the mineralization of urea). The smaller C-terminal domain does not appear to have a physiologically-relevant catalytic function, as reported for the allophanate hydrolase of Kluyveromyces lactis, when purified enzyme was tested in vitro. However, the C-terminal domain does have a function in coordinating the quaternary structure of AtzF. Interesting, we also show that AtzF forms a large, ca. 660 kDa, multi-enzyme complex with AtzD and AtzE that is capable of mineralizing cyanuric acid. The function of this complex may be to channel substrates from one active site to the next, effectively protecting unstable metabolites, such as allophanate, from solvent-mediated decarboxylation to a 'dead-end' metabolic product.
X-ray structure of the amidase domain of AtzF, the allophanate hydrolase from the cyanuric acid-mineralizing multienzyme complex.,Balotra S, Newman J, Cowieson NP, French NG, Campbell PM, Briggs LJ, Warden AC, Easton CJ, Peat TS, Scott C Appl Environ Microbiol. 2014 Oct 31. pii: AEM.02783-14. PMID:25362066[3]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Martinez B, Tomkins J, Wackett LP, Wing R, Sadowsky MJ. Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP. J Bacteriol. 2001 Oct;183(19):5684-97. PMID:11544232 doi:http://dx.doi.org/10.1128/JB.183.19.5684-5697.2001
- ↑ Shapir N, Sadowsky MJ, Wackett LP. Purification and characterization of allophanate hydrolase (AtzF) from Pseudomonas sp. strain ADP. J Bacteriol. 2005 Jun;187(11):3731-8. PMID:15901697 doi:http://dx.doi.org/10.1128/JB.187.11.3731-3738.2005
- ↑ Balotra S, Newman J, Cowieson NP, French NG, Campbell PM, Briggs LJ, Warden AC, Easton CJ, Peat TS, Scott C. X-ray structure of the amidase domain of AtzF, the allophanate hydrolase from the cyanuric acid-mineralizing multienzyme complex. Appl Environ Microbiol. 2014 Oct 31. pii: AEM.02783-14. PMID:25362066 doi:http://dx.doi.org/10.1128/AEM.02783-14
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