4faq

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<StructureSection load='4faq' size='340' side='right'caption='[[4faq]], [[Resolution|resolution]] 3.11&Aring;' scene=''>
<StructureSection load='4faq' size='340' side='right'caption='[[4faq]], [[Resolution|resolution]] 3.11&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4faq]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FAQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4FAQ FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4faq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oceanobacillus_iheyensis Oceanobacillus iheyensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FAQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4FAQ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.11&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4e8k|4e8k]], [[4e8m|4e8m]], [[4e8n|4e8n]], [[4e8p|4e8p]], [[4e8q|4e8q]], [[4e8r|4e8r]], [[4e8t|4e8t]], [[4e8v|4e8v]], [[4far|4far]], [[4fau|4fau]], [[4faw|4faw]], [[4fax|4fax]], [[4fb0|4fb0]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4faq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4faq OCA], [http://pdbe.org/4faq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4faq RCSB], [http://www.ebi.ac.uk/pdbsum/4faq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4faq ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4faq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4faq OCA], [https://pdbe.org/4faq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4faq RCSB], [https://www.ebi.ac.uk/pdbsum/4faq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4faq ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Group II introns are self-splicing ribozymes that share a reaction mechanism and a common ancestor with the eukaryotic spliceosome, thereby providing a model system for understanding the chemistry of pre-mRNA splicing. Here we report 14 crystal structures of a group II intron at different stages of catalysis. We provide a detailed mechanism for the first step of splicing, we describe a reversible conformational change between the first and the second steps of splicing, and we present the ligand-free intron structure after splicing in an active state that corresponds to the retrotransposable form of the intron. During each reaction, the reactants are aligned and activated by a heteronuclear four-metal-ion center that contains a metal cluster and obligate monovalent cations, and they adopt a structural arrangement similar to that of protein endonucleases. Based on our data, we propose a model for the splicing cycle and show that it is applicable to the eukaryotic spliceosome.
 
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Visualizing Group II Intron Catalysis through the Stages of Splicing.,Marcia M, Pyle AM Cell. 2012 Oct 26;151(3):497-507. doi: 10.1016/j.cell.2012.09.033. PMID:23101623<ref>PMID:23101623</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 4faq" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Marcia, M]]
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[[Category: Oceanobacillus iheyensis]]
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[[Category: Pyle, A M]]
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[[Category: Marcia M]]
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[[Category: Retrotransposition]]
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[[Category: Pyle AM]]
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[[Category: Ribozyme]]
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[[Category: Rna]]
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[[Category: Self-splicing]]
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[[Category: Spliceosome]]
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Current revision

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exon

PDB ID 4faq

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