Avidin 3D structures

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(New page: == 3D structures of Avidin == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Avidin **3fdc, 2jgs, [[2c4i...)
Current revision (10:05, 24 November 2024) (edit) (undo)
 
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Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
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{{#tree:id=OrganizedByTopic|openlevels=0|
{{#tree:id=OrganizedByTopic|openlevels=0|
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*Avidin
+
*Avidin 21-152
-
**[[3fdc]], [[2jgs]], [[2c4i]], [[1vyo]], [[1rav]], [[1ave]] – cAv – chicken<br />
+
**[[3fdc]], [[2jgs]], [[2c4i]], [[1vyo]], [[1rav]], [[1ave]], [[7p4z]] – cAv – chicken<br />
**[[2a5b]], [[2a5c]], [[2a8g]] – cAv+deoxyribose<br />
**[[2a5b]], [[2a5c]], [[2a8g]] – cAv+deoxyribose<br />
**[[1nqn]], [[2cam]], [[4bcs]], [[4u46]], [[5lur]] – cAv (mutant)<br />
**[[1nqn]], [[2cam]], [[4bcs]], [[4u46]], [[5lur]] – cAv (mutant)<br />
-
**[[1ldo]], [[1ldq]], [[1lel]], [[1ij8]], [[1avd]], [[2avi]], [[3vgw]], [[3vhh]], [[3vhi]], [[3vhm]], [[4i60]], [[4jhq]], [[5hlm]], [[5iru]], [[5irw]], [[5myq]] – cAV + biotin derivative<br />
+
**[[1ldo]], [[1ldq]], [[1lel]], [[1ij8]], [[1avd]], [[2avi]], [[3vgw]], [[3vhh]], [[3vhi]], [[3vhm]], [[4i60]], [[4jhq]], [[5hlm]], [[5iru]], [[5irw]], [[5myq]], [[6xnd]] – cAV + biotin derivative<br />
**[[5chk]] – cAV+ HABA<br />
**[[5chk]] – cAV+ HABA<br />
 +
**[[8ck7]] – cAV+ drug<br />
 +
**[[7zn1]], [[7zyl]] – cAV+ piperidin derivative
**[[3szh]], [[3szi]] – SdAV – ''Shewanella denitrificans''<br />
**[[3szh]], [[3szi]] – SdAV – ''Shewanella denitrificans''<br />
**[[3t2x]] – SdAV (mutant)<br />
**[[3t2x]] – SdAV (mutant)<br />
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**[[3t2w]] – SdAV (mutant) + biotin
**[[3t2w]] – SdAV (mutant) + biotin
-
* Streptavidin
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*Streptavidin full length 1-183
-
**[[2bc3]], [[2iza]], [[2izb]], [[2izc]], [[2izd]], [[2ize]], [[2rta]], [[2rtb]], [[2rtc]], [[3ry1]], [[4gd9]]. [[4gda]], [[4gjs]] - StrAv - ''Streptomyces avidinii''<br />
+
**[[2bc3]], [[5vcq]], [[5n8t]], [[7ek8]], [[7ek9]] – StrAv - ''Streptomyces avidinii''<br />
-
**[[3mm0]], [[3pk2]], [[3rds]], [[3rdx]], [[3re5]], [[3re6]], [[4gjv]] - StrAv (mutant) <br />
+
**[[2qcb]], [[7efc]], [[7efd]] – StrAv + biotin derivative <br />
-
**[[1swa]], [[1swb]], [[1swc]], [[1ry1]] - StrAv core<br />
+
**[[4dne]] - StrAv (mutant)+biotin derivative<br />
-
**[[1swh]], [[1swj]], [[1swl]], [[1swo]], [[1swq]], [[1sws]], [[2y3e]], [[3t6l]] - StrAv core (mutant)<br />
+
**[[5n99]], [[5n8w]], [[5n8j]], [[5n8e]], [[5n8b]], [[5n89]], [[5n7x]] - StrAv + peptide<br />
-
**[[4jnj]] – StrAv/rhizavidin<br />
+
**[[7cq0]] – ScAv - ''Streptomyces cinamonensis''<br />
-
**[[4jo6]] – StrAv + SBP-TAG<br />
+
**[[7cpz]] – StrAv+ biotin <br />
-
*''Streptavidin binary complexes''
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*Streptavidin core residues 38-183
 +
 
 +
**[[1swa]], [[1swb]], [[1swc]], [[1ry1]], [[2iza]], [[2izb]], [[2izc]], [[2izd]], [[2ize]], [[2rta]], [[2rtb]], [[2rtc]], [[3ry1]], [[4gd9]]. [[4gda]], [[4gjs]], [[4jnj]], [[6lng]], [[6ud1]], [[7knl]] - StrAv <br />
 +
**[[6j6k]], [[7dy0]] - StrAv – Cryo EM <br />
 +
**[[1swh]], [[1swj]], [[1swl]], [[1swo]], [[1swq]], [[1sws]], [[2y3e]], [[3t6l]], [[4bx6]], [[4bx5]], [[3mm0]], [[3pk2]], [[3rds]], [[3rdx]], [[3re5]], [[3re6]], [[4gjv]],[[1rxj]], [[1rxk]], [[1nqm]], [[1kff]], [[1kl4]], [[1luq]], [[1mm9]], [[1moy]], [[1n4j]] [[1n7y]], [[1n9y]] - StrAv (mutant) <br />
 +
**[[1rst]], [[1rsu]], [[4jo6]], [[6sok]], [[6sos]], [[6tip]] - StrAv + strep-tag II peptide<br />
 +
**[[1nbx]], [[1swf]], [[1swu]], [[1kl3]], [[1kl5]] - StrAv (mutant) + strep-tag II peptide<br />
 +
**[[1stp]], [[2izf]], [[2izg]], [[2izh]], [[2izi]], [[2izj]], [[2rtd]], [[2rte]], [[2rtf]], [[2rtg]], [[4gda]], [[1mk5]], [[1swd]], [[1swe]], [[2f01]], [[2gh7]], [[3ry2]], [[6m9b]], [[6uc3]], [[6udc]] - StrAv +biotin<br />
 +
**[[6j6j]] - StrAv + biotin – Cryo EM<br />
 +
**[[1df8]], [[1mep]], [[1n43]], [[1n9m]], [[1ndj]], [[1swg]], [[3rdm]], [[3rdo]], [[4ekv]], [[6aul]], [[4yvb]], [[1swk]], [[1swn]], [[1swp]], [[1swr]], [[1swt]], [[3mg5]], [[2y3f]], [[3t6f]], [[3wyq]], [[6vjk]], [[6vjl]] - StrAv (mutant) +biotin<br />
 +
**[[1lcv]], [[1lcw]], [[1lcz]], [[1i9h]], [[2izl]], [[2rtl]], [[2rtm]], [[2rtn]], [[2rto]], [[2rtp]], [[2rtq]], [[2rtr]], [[5jd2]], [[5vkx]], [[5vl5]], [[5vl8]], [[5wba]], [[6anx]], [[6gh7]], [[4irw]], [[2wpu]], [[4cpf]], [[4cpe]], [[3wyp]], [[5wbc]], [[5l3y]], [[5k68]], [[5k67]], [[7nlv]] – StrAv +biotin derivative<br />
 +
**[[1nc9]], [[3rdq]], [[6auc]], [[6aue]], [[6auh]], [[6auo]], [[6fh8]], [[6fry]], [[1rxh]], [[5wbb]], [[5wbd]], [[6ess]], [[6esu]], [[6gmi]], [[5f2b]], [[5cse]], [[4oka]], [[4cpi]], [[4cph]], [[4bx7]], [[3x00]], [[3wzq]], [[3wzp]], [[3wzn]], [[3wzo]] - StrAv (mutant)+biotin derivative<br />
 +
**[[3rdu]], [[5to2]] - StrAv (mutant) + PEG<br />
 +
**[[1pts]], [[1sld]], [[1sle]], [[1slg]], [[1str]], [[1sts]], [[1vwa]], [[1vwb]], [[1vwc]], [[1vwd]], [[1vwe]], [[1vwf]], [[1vwg]], [[1vwh]], [[1vwi]], [[1vwj]], [[1vwk]], [[1vwl]], [[1vwm]], [[1vwn]], [[1vwo]], [[1vwp]], [[1vwq]], [[1vwr]], [[2g5l]] - StrAv + peptide<br />
 +
**[[1slf]] - StrAv + SO4<br />
 +
**[[1sre]], [[1srf]], [[1srg]], [[1srh]], [[1sri]], [[1srj]] - StrAv + benzoic acid ligands<br />
 +
**[[2izk]], [[2rth]], [[2rti]], [[2rtj]], [[2rtk]] – StrAV +glycouril<br />
 +
**[[6avk]] – StrAv + oxazole derivative<br />
 +
**[[5b5g]], [[5b5f]], [[4y5d]], [[4y59]], [[6t1e]], [[6t1g]], [[6t1k]], [[6t2l]], [[6t2y]], [[6t2z]], [[6t30]], [[6t31]], [[6t32]], [[6y25]], [[6y2m]], [[6y2t]], [[6y33]], [[6y34]], [[6y3q]] – StrAv + pyridine derivative<br />
 +
**[[6ui0]], [[6uiu]], [[6uiz]], [[6us6]] – StrAv (mutant) + pyridine derivative<br />
 +
**[[6s4q]], [[6s50]] – StrAv + imidazole derivative<br />
 +
**[[6vo9]], [[6vob]], [[6voz]], [[6vp1]], [[6vp2]], [[6vp3]], [[7kby]], [[7kbz]] – StrAv (mutant) + imidazole derivative<br />
 +
**[[6ud6]], [[6udb]] – StrAv + coumarin derivative<br />
 +
**[[8aqd]], [[8aqj]] – StrAv + probe<br />
 +
**[[7zx9]], [[7zxz]] – StrAv + fluorescent substrate<br />
 +
**[[7zof]] – StrAv + iron-porphyrin<br />
 +
 
 +
*Streptavidin residues 1-129
-
**[[1rxh]] – StrAv (mutant)+ biotinyl p-nitroaniline<br />
 
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**[[1rxj]], [[1rxk]], [[1nqm]], [[1kff]], [[1kl4]], [[1luq]], [[1mm9]], [[1moy]], [[1n4j]], [[1n7y]], [[1n9y]], [[1nbx]], [[1swf]], [[1swu]], [[1kl3]], [[1kl5]] - StrAv (mutant) + strep-tag II peptide<br />
 
-
**[[1rst]], [[1rsu]] - StrAv + strep-tag II peptide<br />
 
-
**[[1df8]], [[1mep]], [[1n43]], [[1n9m]], [[1ndj]], [[1swg]], [[3rdm]], [[3rdo]], [[4ekv]] - StrAv (mutant)+biotin<br />
 
-
**[[1nc9]], [[3rdq]], [[4dne]] - StrAv (mutant)+biotin derivative<br />
 
-
**[[2izl]], [[2rtl]], [[2rtm]], [[2rtn]], [[2rto]], [[2rtp]], [[2rtq]], [[2rtr]] - StrAv +iminobiotin<br />
 
-
**[[1mk5]], [[1swd]], [[1swe]], [[2f01]], [[2gh7]], [[3ry2]] - StrAv core+biotin<br />
 
-
**[[1swk]], [[1swn]], [[1swp]], [[1swr]], [[1swt]], [[3mg5]], [[2y3f]], [[3t6f]] - StrAv core (mutant) + biotin<br />
 
-
**[[1stp]], [[2izf]], [[2izg]], [[2izh]], [[2izi]], [[2izj]], [[2rtd]], [[2rte]], [[2rtf]], [[2rtg]] - StrAv +biotin<br />
 
-
**[[3rdu]] - StrAv (mutant) + PEG<br />
 
-
**[[1hqq]], [[1hxl]] – StrAv + MP-2 (mutant)<br />
 
**[[1hy2]] - StrAv + MP-1 <br />
**[[1hy2]] - StrAv + MP-1 <br />
**[[1hxz]] - StrAv + MP-2<br />
**[[1hxz]] - StrAv + MP-2<br />
-
**[[1pts]], [[1sld]], [[1sle]], [[1slg]], [[1str]], [[1sts]], [[1vwa]], [[1vwb]], [[1vwc]], [[1vwd]], [[1vwe]], [[1vwf]], [[1vwg]], [[1vwh]], [[1vwi]], [[1vwj]], [[1vwk]], [[1vwl]], [[1vwm]], [[1vwn]], [[1vwo]], [[1vwp]], [[1vwq]], [[1vwr]], [[2g5l]] - StrAv + peptide<br />
+
**[[1hqq]], [[1hxl]] – StrAv + MP-2 (mutant) <br />
-
**[[1slf]] - StrAv + SO4<br />
+
-
**[[1sre]], [[1srf]], [[1srg]], [[1srh]], [[1sri]], [[1srj]] - StrAv + benzoic acid ligands<br />
+
-
**[[1lcv]], [[1lcw]], [[1lcz]], [[1i9h]] – StrAv+biotin derivative<br />
+
-
**[[2izk]], [[2rth]], [[2rti]], [[2rtj]], [[2rtk]] – StrAV+glycouril<br />
+
-
**[[2qcb]], [[2wpu]] – StrAv+Ru ligand
+
-
* Rhizavidin
+
*Rhizavidin
**[[3ew1]] – RhiAv – ''Rhizobium etli''<br />
**[[3ew1]] – RhiAv – ''Rhizobium etli''<br />
-
**[[3ew2]] – RhiAV+biotin<br />
+
**[[3ew2]] – RhiAV+biotin
-
* Xenavidin
+
*Xenavidin
-
**[[2uz2]], [[2uyw]] – XenAv – frog<br />
+
**[[2uz2]], [[2uyw]] – XenAv – frog
-
* Tamavidin
+
*Tamavidin
**[[2zsc]] – TanAv – Tamogitake mushroom
**[[2zsc]] – TanAv – Tamogitake mushroom
-
* Bradavidin
+
*Bradavidin
**[[4ggr]], [[4ggt]] – BjAv – ''Bradyrhizobium japonicum''<br />
**[[4ggr]], [[4ggt]] – BjAv – ''Bradyrhizobium japonicum''<br />
**[[4ggz]] – BjAv + biotin<br />
**[[4ggz]] – BjAv + biotin<br />
-
*Hoefavidin
+
* Hoefavidin
**[[4z6j]] – HpAv – ''Hoeflea phototrophica''<br />
**[[4z6j]] – HpAv – ''Hoeflea phototrophica''<br />
 +
**[[6rtq]] – HpAv (mutant)<br />
**[[4z27]] – HpAv short <br />
**[[4z27]] – HpAv short <br />
**[[4z28]] – HpAv short + biotin <br />
**[[4z28]] – HpAv short + biotin <br />
**[[4z2p]], [[4z2v]], [[4z2o]] – HpAv short + peptide <br />
**[[4z2p]], [[4z2v]], [[4z2o]] – HpAv short + peptide <br />
-
*Shwanavidin
+
* Shwanavidin
**[[3szi]], [[3szh]] – SdAv – ''Shewanella dentrifica''<br />
**[[3szi]], [[3szh]] – SdAv – ''Shewanella dentrifica''<br />
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**[[3szj]] – SdAv + biotin<br />
**[[3szj]] – SdAv + biotin<br />
**[[3t2w]] – SdAv (mutant) + biotin<br />
**[[3t2w]] – SdAv (mutant) + biotin<br />
 +
 +
* Afifavidin
 +
 +
**[[6hds]] – ApAv residues 1-131 – ''Afifella pfennigii''<br />
 +
**[[6hdt]] – ApAv residues 1-131 + biotin<br />
 +
**[[6hdv]] – ApAv residues 1-136<br />
 +
 +
* Wilavidin
 +
 +
**[[7our]], [[7p8y]] – GbAv – ''Gammaproteoteobacteia bacterium''<br />
 +
**[[7ouq]], [[7p8z]] – GbAv + biotin <br />
* Zebavidin
* Zebavidin
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**[[2mf6]] - cAVR4/Av (mutant)+biotin – NMR<br />
**[[2mf6]] - cAVR4/Av (mutant)+biotin – NMR<br />
}}
}}
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[[Category:Topic Page]]

Current revision

3D structures of Avidin

Updated on 24-November-2024

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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