2wpa
From Proteopedia
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<StructureSection load='2wpa' size='340' side='right'caption='[[2wpa]], [[Resolution|resolution]] 2.51Å' scene=''> | <StructureSection load='2wpa' size='340' side='right'caption='[[2wpa]], [[Resolution|resolution]] 2.51Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[2wpa]] is a 4 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2wpa]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WPA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WPA FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=889:N-{6,6-DIMETHYL-5-[(1-METHYLPIPERIDIN-4-YL)CARBONYL]-1,4,5,6-TETRAHYDROPYRROLO[3,4-C]PYRAZOL-3-YL}-3-METHYLBUTANAMIDE'>889</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.51Å</td></tr> |
- | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=889:N-{6,6-DIMETHYL-5-[(1-METHYLPIPERIDIN-4-YL)CARBONYL]-1,4,5,6-TETRAHYDROPYRROLO[3,4-C]PYRAZOL-3-YL}-3-METHYLBUTANAMIDE'>889</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |
- | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wpa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wpa OCA], [https://pdbe.org/2wpa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wpa RCSB], [https://www.ebi.ac.uk/pdbsum/2wpa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wpa ProSAT]</span></td></tr> | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/CDK2_HUMAN CDK2_HUMAN] Serine/threonine-protein kinase involved in the control of the cell cycle; essential for meiosis, but dispensable for mitosis. Phosphorylates CTNNB1, USP37, p53/TP53, NPM1, CDK7, RB1, BRCA2, MYC, NPAT, EZH2. Interacts with cyclins A, B1, B3, D, or E. Triggers duplication of centrosomes and DNA. Acts at the G1-S transition to promote the E2F transcriptional program and the initiation of DNA synthesis, and modulates G2 progression; controls the timing of entry into mitosis/meiosis by controlling the subsequent activation of cyclin B/CDK1 by phosphorylation, and coordinates the activation of cyclin B/CDK1 at the centrosome and in the nucleus. Crucial role in orchestrating a fine balance between cellular proliferation, cell death, and DNA repair in human embryonic stem cells (hESCs). Activity of CDK2 is maximal during S phase and G2; activated by interaction with cyclin E during the early stages of DNA synthesis to permit G1-S transition, and subsequently activated by cyclin A2 (cyclin A1 in germ cells) during the late stages of DNA replication to drive the transition from S phase to mitosis, the G2 phase. EZH2 phosphorylation promotes H3K27me3 maintenance and epigenetic gene silencing. Phosphorylates CABLES1 (By similarity). Cyclin E/CDK2 prevents oxidative stress-mediated Ras-induced senescence by phosphorylating MYC. Involved in G1-S phase DNA damage checkpoint that prevents cells with damaged DNA from initiating mitosis; regulates homologous recombination-dependent repair by phosphorylating BRCA2, this phosphorylation is low in S phase when recombination is active, but increases as cells progress towards mitosis. In response to DNA damage, double-strand break repair by homologous recombination a reduction of CDK2-mediated BRCA2 phosphorylation. Phosphorylation of RB1 disturbs its interaction with E2F1. NPM1 phosphorylation by cyclin E/CDK2 promotes its dissociates from unduplicated centrosomes, thus initiating centrosome duplication. Cyclin E/CDK2-mediated phosphorylation of NPAT at G1-S transition and until prophase stimulates the NPAT-mediated activation of histone gene transcription during S phase. Required for vitamin D-mediated growth inhibition by being itself inactivated. Involved in the nitric oxide- (NO) mediated signaling in a nitrosylation/activation-dependent manner. USP37 is activated by phosphorylation and thus triggers G1-S transition. CTNNB1 phosphorylation regulates insulin internalization.<ref>PMID:10499802</ref> <ref>PMID:11051553</ref> <ref>PMID:10995386</ref> <ref>PMID:10995387</ref> <ref>PMID:10884347</ref> <ref>PMID:11113184</ref> <ref>PMID:15800615</ref> <ref>PMID:18372919</ref> <ref>PMID:20147522</ref> <ref>PMID:20079829</ref> <ref>PMID:20935635</ref> <ref>PMID:20195506</ref> <ref>PMID:19966300</ref> <ref>PMID:21262353</ref> <ref>PMID:21596315</ref> <ref>PMID:21319273</ref> <ref>PMID:17495531</ref> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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==See Also== | ==See Also== | ||
- | *[[Cyclin|Cyclin]] | + | *[[Cyclin 3D structures|Cyclin 3D structures]] |
- | *[[Cyclin-dependent kinase|Cyclin-dependent kinase]] | + | *[[Cyclin-dependent kinase 3D structures|Cyclin-dependent kinase 3D structures]] |
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Homo sapiens]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | + | [[Category: Albanese C]] | |
- | [[Category: Albanese | + | [[Category: Alzani R]] |
- | [[Category: Alzani | + | [[Category: Amici R]] |
- | [[Category: Amici | + | [[Category: Avanzi N]] |
- | [[Category: Avanzi | + | [[Category: Ballinari D]] |
- | [[Category: Ballinari | + | [[Category: Bischoff J]] |
- | [[Category: Bischoff | + | [[Category: Borghi D]] |
- | [[Category: Borghi | + | [[Category: Brasca MG]] |
- | [[Category: Brasca | + | [[Category: Casale E]] |
- | [[Category: Casale | + | [[Category: Ciomei M]] |
- | [[Category: Ciomei | + | [[Category: Croci V]] |
- | [[Category: Croci | + | [[Category: Fiorentini F]] |
- | [[Category: Fiorentini | + | [[Category: Isacchi A]] |
- | [[Category: Isacchi | + | [[Category: Mercurio C]] |
- | [[Category: Mercurio | + | [[Category: Nesi M]] |
- | [[Category: Nesi | + | [[Category: Orsini P]] |
- | [[Category: Orsini | + | [[Category: Pastori W]] |
- | [[Category: Pastori | + | [[Category: Pesenti E]] |
- | [[Category: Pesenti | + | [[Category: Pevarello P]] |
- | [[Category: Pevarello | + | [[Category: Roussel P]] |
- | [[Category: Roussel | + | [[Category: Varasi M]] |
- | [[Category: Varasi | + | [[Category: Volpi D]] |
- | [[Category: Volpi | + | [[Category: Vulpetti A]] |
- | [[Category: Vulpetti | + | |
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Current revision
Optimisation of 6,6-Dimethyl Pyrrolo 3,4-c pyrazoles: Identification of PHA-793887, a Potent CDK Inhibitor Suitable for Intravenous Dosing
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Categories: Homo sapiens | Large Structures | Albanese C | Alzani R | Amici R | Avanzi N | Ballinari D | Bischoff J | Borghi D | Brasca MG | Casale E | Ciomei M | Croci V | Fiorentini F | Isacchi A | Mercurio C | Nesi M | Orsini P | Pastori W | Pesenti E | Pevarello P | Roussel P | Varasi M | Volpi D | Vulpetti A