2yyf

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[[Image:2yyf.jpg|left|200px]]
 
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==Purification and structural characterization of a D-amino acid containing conopeptide, marmophine, from Conus marmoreus==
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The line below this paragraph, containing "STRUCTURE_2yyf", creates the "Structure Box" on the page.
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<StructureSection load='2yyf' size='340' side='right'caption='[[2yyf]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2yyf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Conus_marmoreus Conus marmoreus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YYF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YYF FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DPN:D-PHENYLALANINE'>DPN</scene>, <scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
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{{STRUCTURE_2yyf| PDB=2yyf | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yyf OCA], [https://pdbe.org/2yyf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yyf RCSB], [https://www.ebi.ac.uk/pdbsum/2yyf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yyf ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/COMA_CONMR COMA_CONMR] May act as a neurotoxin.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Cone snails, a group of gastropod animals that inhabit tropical seas, are capable of producing a mixture of peptide neurotoxins, namely conotoxins, for defense and predation. Conotoxins are mainly disulfide-rich short peptides that act on different ion channels, neurotransmitter receptors, or transporters in the nervous system. They exhibit highly diverse compositions, structures, and biological functions. In this work, a novel Cys-free 15-residue conopeptide from Conus marmoreus was purified and designated as conomarphin. Conomarphin is unique because of its D-configuration Phe at the third residue from the C-terminus, which was identified using HPLC by comparing native conomarphin fragments and the corresponding synthetic peptides cleaved by different proteases. Surprisingly, the cDNA-encoded precursor of conomarphin was found to share the conserved signal peptide with other M-superfamily conotoxins, clearly indicating that conomarphin should belong to the M-superfamily, although conomarphin shares no homology with other six-Cys-containing M-superfamily conotoxins. Furthermore, NMR spectroscopy experiments established that conomarphin adopts a well-defined structure in solution, with a tight loop in the middle of the peptide and a short 3(10)-helix at the C-terminus. By contrast, no loop in L-Phe13-conomarphin was found, which suggests that D-Phe13 is essential for the structure of conomarphin. In conclusion, conomarphin may represent a new conotoxin family, whose biological activity remains to be identified.
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'''Purification and structural characterization of a D-amino acid containing conopeptide, marmophine, from Conus marmoreus'''
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Purification and structural characterization of a D-amino acid-containing conopeptide, conomarphin, from Conus marmoreus.,Han Y, Huang F, Jiang H, Liu L, Wang Q, Wang Y, Shao X, Chi C, Du W, Wang C FEBS J. 2008 May;275(9):1976-87. Epub 2008 Mar 18. PMID:18355315<ref>PMID:18355315</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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==Overview==
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</div>
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Cone snails, a group of gastropod animals that inhabit tropical seas, are capable of producing a mixture of peptide neurotoxins, namely conotoxins, for defense and predation. Conotoxins are mainly disulfide-rich short peptides that act on different ion channels, neurotransmitter receptors, or transporters in the nervous system. They exhibit highly diverse compositions, structures, and biological functions. In this work, a novel Cys-free 15-residue conopeptide from Conus marmoreus was purified and designated as conomarphin. Conomarphin is unique because of its d-configuration Phe at the third residue from the C-terminus, which was identified using HPLC by comparing native conomarphin fragments and the corresponding synthetic peptides cleaved by different proteases. Surprisingly, the cDNA-encoded precursor of conomarphin was found to share the conserved signal peptide with other M-superfamily conotoxins, clearly indicating that conomarphin should belong to the M-superfamily, although conomarphin shares no homology with other six-Cys-containing M-superfamily conotoxins. Furthermore, NMR spectroscopy experiments established that conomarphin adopts a well-defined structure in solution, with a tight loop in the middle of the peptide and a short 3(10)-helix at the C-terminus. By contrast, no loop in l-Phe13-conomarphin was found, which suggests that d-Phe13 is essential for the structure of conomarphin. In conclusion, conomarphin may represent a new conotoxin family, whose biological activity remains to be identified.
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<div class="pdbe-citations 2yyf" style="background-color:#fffaf0;"></div>
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== References ==
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==About this Structure==
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<references/>
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2YYF is a [[Single protein]] structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YYF OCA].
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__TOC__
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</StructureSection>
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==Reference==
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[[Category: Conus marmoreus]]
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Purification and structural characterization of a d-amino acid-containing conopeptide, conomarphin, from Conus marmoreus., Han Y, Huang F, Jiang H, Liu L, Wang Q, Wang Y, Shao X, Chi C, Du W, Wang C, FEBS J. 2008 Mar 18;. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18355315 18355315]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Du W]]
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[[Category: Du, W.]]
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[[Category: Han Y]]
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[[Category: Han, Y.]]
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[[Category: Huang F]]
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[[Category: Huang, F.]]
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[[Category: Wang C]]
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[[Category: Wang, C.]]
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[[Category: M-conotoxin mr12]]
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[[Category: Mr1931]]
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[[Category: Nmr]]
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Current revision

Purification and structural characterization of a D-amino acid containing conopeptide, marmophine, from Conus marmoreus

PDB ID 2yyf

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