This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6fdx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:27, 9 May 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6fdx' size='340' side='right'caption='[[6fdx]], [[Resolution|resolution]] 2.31&Aring;' scene=''>
<StructureSection load='6fdx' size='340' side='right'caption='[[6fdx]], [[Resolution|resolution]] 2.31&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6fdx]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FDX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FDX FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6fdx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FDX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6FDX FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=D5Z:(4aS,8aR)-2-[1-(2-aminoquinazolin-4-yl)piperidin-4-yl]-4-(3,4-dimethoxyphenyl)-1,2,4a,5,8,8a-hexahydrophthalazin-1-one'>D5Z</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GAI:GUANIDINE'>GAI</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.31&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6fdi|6fdi]], [[6fds|6fds]], [[6fdw|6fdw]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=D5Z:(4aS,8aR)-2-[1-(2-aminoquinazolin-4-yl)piperidin-4-yl]-4-(3,4-dimethoxyphenyl)-1,2,4a,5,8,8a-hexahydrophthalazin-1-one'>D5Z</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GAI:GUANIDINE'>GAI</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6fdx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fdx OCA], [http://pdbe.org/6fdx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6fdx RCSB], [http://www.ebi.ac.uk/pdbsum/6fdx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6fdx ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6fdx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fdx OCA], [https://pdbe.org/6fdx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6fdx RCSB], [https://www.ebi.ac.uk/pdbsum/6fdx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6fdx ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8WQX9_9TRYP Q8WQX9_9TRYP]
 +
 +
==See Also==
 +
*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Brown, D G]]
+
[[Category: Trypanosoma brucei]]
-
[[Category: Singh, A K]]
+
[[Category: Brown DG]]
-
[[Category: African trypanosomiasis]]
+
[[Category: Singh AK]]
-
[[Category: Hydrolase]]
+
-
[[Category: Parasitic phosphodiesterase]]
+
-
[[Category: Sleeping sickness]]
+

Current revision

Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-1086

PDB ID 6fdx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools