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| | <StructureSection load='4o5r' size='340' side='right'caption='[[4o5r]], [[Resolution|resolution]] 3.33Å' scene=''> | | <StructureSection load='4o5r' size='340' side='right'caption='[[4o5r]], [[Resolution|resolution]] 3.33Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4o5r]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecobd Ecobd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4O5R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4O5R FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4o5r]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_BL21(DE3) Escherichia coli BL21(DE3)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4O5R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4O5R FirstGlance]. <br> |
| - | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1n8j|1n8j]], [[1yep|1yep]], [[4o5u|4o5u]], [[4o5q|4o5q]]</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.33Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ahpC, B21_00563, ECBD_3047, ECD_00574 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=469008 ECOBD])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4o5r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o5r OCA], [https://pdbe.org/4o5r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4o5r RCSB], [https://www.ebi.ac.uk/pdbsum/4o5r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4o5r ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4o5r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o5r OCA], [http://pdbe.org/4o5r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4o5r RCSB], [http://www.ebi.ac.uk/pdbsum/4o5r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4o5r ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Ecobd]] | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Dip, P V]] | + | [[Category: Dip PV]] |
| - | [[Category: Eisenhaber, B]] | + | [[Category: Eisenhaber B]] |
| - | [[Category: Eisenhaber, F]] | + | [[Category: Eisenhaber F]] |
| - | [[Category: Gruber, G]] | + | [[Category: Gruber G]] |
| - | [[Category: Kamariah, N]] | + | [[Category: Kamariah N]] |
| - | [[Category: Manimekalai, M S.S]] | + | [[Category: Manimekalai MSS]] |
| - | [[Category: Hydrogen peroxide]]
| + | |
| - | [[Category: Oxidoreductase]]
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| Structural highlights
Publication Abstract from PubMed
Hydroperoxides are reactive oxygen species (ROS) that are toxic to all cells and must be converted into the corresponding alcohols to alleviate oxidative stress. In Escherichia coli, the enzyme primarily responsible for this reaction is alkylhydroperoxide reductase (AhpR). Here, the crystal structures of both of the subunits of EcAhpR, EcAhpF (57 kDa) and EcAhpC (21 kDa), have been solved. The EcAhpF structures (2.0 and 2.65 A resolution) reveal an open and elongated conformation, while that of EcAhpC (3.3 A resolution) forms a decameric ring. Solution X-ray scattering analysis of EcAhpF unravels the flexibility of its N-terminal domain, and its binding to EcAhpC was demonstrated by isothermal titration calorimetry. These studies suggest a novel overall mechanistic model of AhpR as a hydroperoxide scavenger, in which the dimeric, extended AhpF prefers complex formation with the AhpC ring to accelerate the catalytic activity and thus to increase the chance of rescuing the cell from ROS.
Structure, mechanism and ensemble formation of the alkylhydroperoxide reductase subunits AhpC and AhpF from Escherichia coli.,Dip PV, Kamariah N, Subramanian Manimekalai MS, Nartey W, Balakrishna AM, Eisenhaber F, Eisenhaber B, Gruber G Acta Crystallogr D Biol Crystallogr. 2014 Nov;70(Pt 11):2848-62. doi:, 10.1107/S1399004714019233. Epub 2014 Oct 16. PMID:25372677[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Dip PV, Kamariah N, Subramanian Manimekalai MS, Nartey W, Balakrishna AM, Eisenhaber F, Eisenhaber B, Gruber G. Structure, mechanism and ensemble formation of the alkylhydroperoxide reductase subunits AhpC and AhpF from Escherichia coli. Acta Crystallogr D Biol Crystallogr. 2014 Nov;70(Pt 11):2848-62. doi:, 10.1107/S1399004714019233. Epub 2014 Oct 16. PMID:25372677 doi:http://dx.doi.org/10.1107/S1399004714019233
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