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| | <StructureSection load='4mnp' size='340' side='right'caption='[[4mnp]], [[Resolution|resolution]] 2.50Å' scene=''> | | <StructureSection load='4mnp' size='340' side='right'caption='[[4mnp]], [[Resolution|resolution]] 2.50Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4mnp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Fusnn Fusnn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MNP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4MNP FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4mnp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 Fusobacterium nucleatum subsp. nucleatum ATCC 25586]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MNP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4MNP FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SLB:5-N-ACETYL-BETA-D-NEURAMINIC+ACID'>SLB</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3b50|3b50]], [[4mmp|4mmp]], [[4mag|4mag]]</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SLB:5-N-ACETYL-BETA-D-NEURAMINIC+ACID'>SLB</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">FN1472, SiaP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=190304 FUSNN])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4mnp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mnp OCA], [https://pdbe.org/4mnp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4mnp RCSB], [https://www.ebi.ac.uk/pdbsum/4mnp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4mnp ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4mnp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mnp OCA], [http://pdbe.org/4mnp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4mnp RCSB], [http://www.ebi.ac.uk/pdbsum/4mnp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4mnp ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q8RDN9_FUSNN Q8RDN9_FUSNN] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Fusnn]] | + | [[Category: Fusobacterium nucleatum subsp. nucleatum ATCC 25586]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Ramaswamy, S]] | + | [[Category: Ramaswamy S]] |
| - | [[Category: Thanuja, G]] | + | [[Category: Thanuja G]] |
| - | [[Category: Sialic acid]]
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| - | [[Category: Sialic acid binding protein]]
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| - | [[Category: Sugar binding protein]]
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| Structural highlights
Function
Q8RDN9_FUSNN
Publication Abstract from PubMed
Sialic acids are a family of related nine-carbon sugar acids that play important roles in both eukaryotes and prokaryotes. These sialic acids are incorporated/decorated onto lipooligosaccharides as terminal sugars in multiple bacteria to evade the host immune system. Many pathogenic bacteria scavenge sialic acids from their host and use them for molecular mimicry. The first step of this process is the transport of sialic acid to the cytoplasm, which often takes place using a tripartite ATP-independent transport system consisting of a periplasmic binding protein and a membrane transporter. In this paper, the structural characterization of periplasmic binding proteins from the pathogenic bacteria Fusobacterium nucleatum, Pasteurella multocida and Vibrio cholerae and their thermodynamic characterization are reported. The binding affinities of several mutations in the Neu5Ac binding site of the Haemophilus influenzae protein are also reported. The structure and the thermodynamics of the binding of sugars suggest that all of these proteins have a very well conserved binding pocket and similar binding affinities. A significant conformational change occurs when these proteins bind the sugar. While the C1 carboxylate has been identified as the primary binding site, a second conserved hydrogen-bonding network is involved in the initiation and stabilization of the conformational states.
Bacterial periplasmic sialic acid-binding proteins exhibit a conserved binding site.,Gangi Setty T, Cho C, Govindappa S, Apicella MA, Ramaswamy S Acta Crystallogr D Biol Crystallogr. 2014 Jul;70(Pt 7):1801-11. doi:, 10.1107/S139900471400830X. Epub 2014 Jun 24. PMID:25004958[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Gangi Setty T, Cho C, Govindappa S, Apicella MA, Ramaswamy S. Bacterial periplasmic sialic acid-binding proteins exhibit a conserved binding site. Acta Crystallogr D Biol Crystallogr. 2014 Jul;70(Pt 7):1801-11. doi:, 10.1107/S139900471400830X. Epub 2014 Jun 24. PMID:25004958 doi:http://dx.doi.org/10.1107/S139900471400830X
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