6ohy

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'''Unreleased structure'''
 
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The entry 6ohy is ON HOLD
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==Chimpanzee SIV Env trimeric ectodomain.==
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<SX load='6ohy' size='340' side='right' viewer='molstar' caption='[[6ohy]], [[Resolution|resolution]] 4.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6ohy]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Simian_immunodeficiency_virus Simian immunodeficiency virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6OHY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6OHY FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ohy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ohy OCA], [https://pdbe.org/6ohy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ohy RCSB], [https://www.ebi.ac.uk/pdbsum/6ohy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ohy ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q1A234_SIV Q1A234_SIV]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Epitope-targeted HIV vaccine design seeks to focus antibody responses to broadly neutralizing antibody (bnAb) sites by sequential immunization. A chimpanzee simian immunodeficiency virus (SIV) envelope (Env) shares a single bnAb site, the variable loop 2 (V2)-apex, with HIV, suggesting its possible utility in an HIV immunization strategy. Here, we generate a chimpanzee SIV Env trimer, MT145K, which displays selective binding to HIV V2-apex bnAbs and precursor versions, but no binding to other HIV specificities. We determine the structure of the MT145K trimer by cryo-EM and show that its architecture is remarkably similar to HIV Env. Immunization of an HIV V2-apex bnAb precursor Ab-expressing knockin mouse with the chimpanzee MT145K trimer induces HIV V2-specific neutralizing responses. Subsequent boosting with an HIV trimer cocktail induces responses that exhibit some virus cross-neutralization. Overall, the chimpanzee MT145K trimer behaves as expected from design both in vitro and in vivo and is an attractive potential component of a sequential immunization regimen to induce V2-apex bnAbs.
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Authors: Pallesen, J., Andrabi, R., de Val, N., Burton, D.R., Ward, A.B.
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The Chimpanzee SIV Envelope Trimer: Structure and Deployment as an HIV Vaccine Template.,Andrabi R, Pallesen J, Allen JD, Song G, Zhang J, de Val N, Gegg G, Porter K, Su CY, Pauthner M, Newman A, Bouton-Verville H, Garces F, Wilson IA, Crispin M, Hahn BH, Haynes BF, Verkoczy L, Ward AB, Burton DR Cell Rep. 2019 May 21;27(8):2426-2441.e6. doi: 10.1016/j.celrep.2019.04.082. PMID:31116986<ref>PMID:31116986</ref>
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Description: Chimpanzee SIV Env trimeric ectodomain.
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Ward, A.B]]
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<div class="pdbe-citations 6ohy" style="background-color:#fffaf0;"></div>
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[[Category: De Val, N]]
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== References ==
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[[Category: Andrabi, R]]
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<references/>
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[[Category: Burton, D.R]]
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__TOC__
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[[Category: Pallesen, J]]
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</SX>
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[[Category: Large Structures]]
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[[Category: Simian immunodeficiency virus]]
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[[Category: Andrabi R]]
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[[Category: Burton DR]]
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[[Category: Pallesen J]]
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[[Category: Ward AB]]
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[[Category: De Val N]]

Current revision

Chimpanzee SIV Env trimeric ectodomain.

6ohy, resolution 4.10Å

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