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| | ==NMR structure of OtTx1a - AMP in DPC micelles== | | ==NMR structure of OtTx1a - AMP in DPC micelles== |
| - | <StructureSection load='2n85' size='340' side='right'caption='[[2n85]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='2n85' size='340' side='right'caption='[[2n85]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2n85]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2N85 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2N85 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2n85]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oxyopes_takobius Oxyopes takobius]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2N85 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2N85 FirstGlance]. <br> |
| - | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2n86|2n86]]</td></tr> | + | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2n85 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2n85 OCA], [https://pdbe.org/2n85 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2n85 RCSB], [https://www.ebi.ac.uk/pdbsum/2n85 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2n85 ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2n85 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2n85 OCA], [http://pdbe.org/2n85 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2n85 RCSB], [http://www.ebi.ac.uk/pdbsum/2n85 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2n85 ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/SPN1A_OXYTA SPN1A_OXYTA] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Arseniev, A]] | + | [[Category: Oxyopes takobius]] |
| - | [[Category: Grishin, E]] | + | [[Category: Arseniev A]] |
| - | [[Category: Kovalchuk, S]] | + | [[Category: Grishin E]] |
| - | [[Category: Nadezhdin, K]] | + | [[Category: Kovalchuk S]] |
| - | [[Category: Romanovskaya, D]] | + | [[Category: Nadezhdin K]] |
| - | [[Category: Sachkova, M]] | + | [[Category: Romanovskaya D]] |
| - | [[Category: Vassilevski, A]] | + | [[Category: Sachkova M]] |
| - | [[Category: Dpc micelle]]
| + | [[Category: Vassilevski A]] |
| - | [[Category: N-terminal end]]
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| - | [[Category: Spider venom]]
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| - | [[Category: Toxin]]
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| Structural highlights
Function
SPN1A_OXYTA
Publication Abstract from PubMed
We have recently demonstrated that a common phenomenon in evolution of spider venom composition is the emergence of so-called modular toxins consisting of two domains, each corresponding to a "usual" single-domain toxin. In this article, we describe the structure of two domains that build up a modular toxin named spiderine or OtTx1a from the venom of Oxyopes takobius. Both domains were investigated by solution NMR in water and detergent micelles used to mimic membrane environment. The N-terminal spiderine domain OtTx1a-AMP (41 amino acid residues) contains no cysteines. It is disordered in aqueous solution but in micelles, it assumes a stable amphiphilic structure consisting of two alpha-helices separated by a flexible linker. On the contrary, the C-terminal domain OtTx1a-ICK (59 residues) is a disulfide-rich polypeptide reticulated by five S-S bridges. It presents a stable structure in water and its core is the inhibitor cystine knot (ICK) or knottin motif that is common among single-domain neurotoxins. OtTx1a-ICK structure is the first knottin with five disulfide bridges and it represents a good reference for the whole oxytoxin family. The affinity of both domains to membranes was measured with NMR using titration by liposome suspensions. In agreement with biological tests, OtTx1a-AMP was found to show high membrane affinity explaining its potent antimicrobial properties.
Modular toxin from the lynx spider Oxyopes takobius: Structure of spiderine domains in solution and membrane-mimicking environment.,Nadezhdin KD, Romanovskaia DD, Sachkova MY, Oparin PB, Kovalchuk SI, Grishin EV, Arseniev AS, Vassilevski AA Protein Sci. 2017 Mar;26(3):611-616. doi: 10.1002/pro.3101. Epub 2017 Feb 12. PMID:27997708[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Nadezhdin KD, Romanovskaia DD, Sachkova MY, Oparin PB, Kovalchuk SI, Grishin EV, Arseniev AS, Vassilevski AA. Modular toxin from the lynx spider Oxyopes takobius: Structure of spiderine domains in solution and membrane-mimicking environment. Protein Sci. 2017 Mar;26(3):611-616. doi: 10.1002/pro.3101. Epub 2017 Feb 12. PMID:27997708 doi:http://dx.doi.org/10.1002/pro.3101
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