|
|
(One intermediate revision not shown.) |
Line 3: |
Line 3: |
| <StructureSection load='5w10' size='340' side='right'caption='[[5w10]], [[Resolution|resolution]] 2.15Å' scene=''> | | <StructureSection load='5w10' size='340' side='right'caption='[[5w10]], [[Resolution|resolution]] 2.15Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5w10]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lepic Lepic]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5W10 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5W10 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5w10]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5W10 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5W10 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMP:ADENOSINE-3,5-CYCLIC-MONOPHOSPHATE'>CMP</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMP:ADENOSINE-3,5-CYCLIC-MONOPHOSPHATE'>CMP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">LIC_13137 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=267671 LEPIC])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5w10 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5w10 OCA], [https://pdbe.org/5w10 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5w10 RCSB], [https://www.ebi.ac.uk/pdbsum/5w10 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5w10 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5w10 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5w10 OCA], [http://pdbe.org/5w10 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5w10 RCSB], [http://www.ebi.ac.uk/pdbsum/5w10 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5w10 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q72MQ6_LEPIC Q72MQ6_LEPIC] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
Line 20: |
Line 21: |
| | | |
| ==See Also== | | ==See Also== |
- | *[[Phosphodiesterase|Phosphodiesterase]] | + | *[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
Line 26: |
Line 27: |
| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Lepic]] | + | [[Category: Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130]] |
- | [[Category: Barbosa, A S]] | + | [[Category: Barbosa AS]] |
- | [[Category: Farah, C S]] | + | [[Category: Farah CS]] |
- | [[Category: Guzzo, C R]] | + | [[Category: Guzzo CR]] |
- | [[Category: Maciel, N K]] | + | [[Category: Maciel NK]] |
- | [[Category: Camp binding domain]]
| + | |
- | [[Category: Effector domain]]
| + | |
- | [[Category: Gaf domain]]
| + | |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Regulates the dgc activity of the ggdef domain]]
| + | |
| Structural highlights
Function
Q72MQ6_LEPIC
Publication Abstract from PubMed
Leptospira interrogans serovar Copenhageni is a human pathogen that causes leptospirosis, a worldwide zoonosis. The L. interrogans genome codes for a wide array of potential diguanylate cyclase (DGC) enzymes with characteristic GGDEF domains capable of synthesizing the cyclic dinucleotide c-di-GMP, known to regulate transitions between different cellular behavioral states in bacteria. Among such enzymes, LIC13137 (Lcd1), which has an N-terminal cGMP-specific phosphodiesterases, adenylyl cyclases, and FhlA (GAF) domain and a C-terminal GGDEF domain, is notable for having close orthologs present only in pathogenic Leptospira species. Although the function and structure of GGDEF and GAF domains have been studied extensively separately, little is known about enzymes with the GAF-GGDEF architecture. In this report, we address the question of how the GAF domain regulates the DGC activity of Lcd1. The full-length Lcd1 and its GAF domain form dimers in solution. The GAF domain binds specifically cAMP (KD of 0.24muM) and has an important role in the regulation of the DGC activity of the GGDEF domain. Lcd1 DGC activity is negligible in the absence of cAMP and is significantly enhanced in its presence (specific activity of 0.13s-1). The crystal structure of the Lcd1 GAF domain in complex with cAMP provides valuable insights toward explaining its specificity for cAMP and pointing to possible mechanisms by which this cyclic nucleotide regulates the assembly of an active DGC enzyme.
Structural and Enzymatic Characterization of a cAMP-Dependent Diguanylate Cyclase from Pathogenic Leptospira Species.,da Costa Vasconcelos FN, Maciel NK, Favaro DC, de Oliveira LC, Barbosa AS, Salinas RK, de Souza RF, Farah CS, Guzzo CR J Mol Biol. 2017 Jul 21;429(15):2337-2352. doi: 10.1016/j.jmb.2017.06.002. Epub, 2017 Jun 7. PMID:28601495[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ da Costa Vasconcelos FN, Maciel NK, Favaro DC, de Oliveira LC, Barbosa AS, Salinas RK, de Souza RF, Farah CS, Guzzo CR. Structural and Enzymatic Characterization of a cAMP-Dependent Diguanylate Cyclase from Pathogenic Leptospira Species. J Mol Biol. 2017 Jul 21;429(15):2337-2352. doi: 10.1016/j.jmb.2017.06.002. Epub, 2017 Jun 7. PMID:28601495 doi:http://dx.doi.org/10.1016/j.jmb.2017.06.002
|