6dsp

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<StructureSection load='6dsp' size='340' side='right'caption='[[6dsp]], [[Resolution|resolution]] 1.37&Aring;' scene=''>
<StructureSection load='6dsp' size='340' side='right'caption='[[6dsp]], [[Resolution|resolution]] 1.37&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6dsp]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_saccharobutylicum_dsm_13864 Clostridium saccharobutylicum dsm 13864]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DSP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DSP FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6dsp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_saccharobutylicum_DSM_13864 Clostridium saccharobutylicum DSM 13864]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DSP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DSP FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PAV:(2R,4S)-2-METHYL-2,3,3,4-TETRAHYDROXYTETRAHYDROFURAN'>PAV</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.37&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lsrB, CLSA_c21430 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1345695 Clostridium saccharobutylicum DSM 13864])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PAV:(2R,4S)-2-METHYL-2,3,3,4-TETRAHYDROXYTETRAHYDROFURAN'>PAV</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dsp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dsp OCA], [http://pdbe.org/6dsp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dsp RCSB], [http://www.ebi.ac.uk/pdbsum/6dsp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dsp ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dsp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dsp OCA], [https://pdbe.org/6dsp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dsp RCSB], [https://www.ebi.ac.uk/pdbsum/6dsp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dsp ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/U5MRH9_CLOSA U5MRH9_CLOSA]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Autoinducer-2 (AI-2) is unique among quorum-sensing signaling molecules, as it is produced and recognized by a wide variety of bacteria and thus facilitates interspecies communication. To date, two classes of AI-2 receptors have been identified: the LuxP-type, present in the Vibrionales, and the LsrB-type, found in a number of phylogenetically distinct bacterial families. Recently, AI-2 was shown to affect the colonization levels of a variety of bacteria in the microbiome of the mouse gut, including members of the genus Clostridium, but no AI-2 receptor had been identified in this genus. Here, we identify a noncanonical, functional LsrB-type receptor in Clostridium saccharobutylicum. This novel LsrB-like receptor is the first one reported with variations in the binding-site amino acid residues that interact with AI-2. The crystal structure of the C. saccharobutylicum receptor determined at 1.35 A resolution revealed that it binds the same form of AI-2 as the other known LsrB-type receptors, and isothermal titration calorimetry (ITC) assays showed that binding of AI-2 occurs at a submicromolar concentration. Using phylogenetic analysis, we inferred that the newly identified noncanonical LsrB receptor shares a common ancestor with known LsrB receptors and that noncanonical receptors are present in bacteria from different phyla. This led us to identify putative AI-2 receptors in bacterial species in which no receptors were known, as in bacteria belonging to the Spirochaetes and Actinobacteria phyla. Thus, this work represents a significant step toward understanding how AI-2-mediated quorum sensing influences bacterial interactions in complex biological niches.
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Identification of novel autoinducer-2 receptors in Clostridia reveals plasticity in the binding site of the LsrB receptor family.,Torcato IM, Kasal MR, Brito PH, Miller ST, Xavier KB J Biol Chem. 2019 Mar 22;294(12):4450-4463. doi: 10.1074/jbc.RA118.006938. Epub, 2019 Jan 29. PMID:30696769<ref>PMID:30696769</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6dsp" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Clostridium saccharobutylicum dsm 13864]]
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[[Category: Clostridium saccharobutylicum DSM 13864]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Miller, S T]]
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[[Category: Miller ST]]
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[[Category: Torcato, I M]]
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[[Category: Torcato IM]]
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[[Category: Xavier, K B]]
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[[Category: Xavier KB]]
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[[Category: Ai-2 receptor]]
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[[Category: Signaling protein]]
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Current revision

LsrB from Clostridium saccharobutylicum in complex with AI-2

PDB ID 6dsp

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