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| <StructureSection load='6m9y' size='340' side='right'caption='[[6m9y]], [[Resolution|resolution]] 1.35Å' scene=''> | | <StructureSection load='6m9y' size='340' side='right'caption='[[6m9y]], [[Resolution|resolution]] 1.35Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6m9y]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Amphioxus Amphioxus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M9Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6M9Y FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6m9y]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Branchiostoma_floridae Branchiostoma floridae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M9Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M9Y FirstGlance]. <br> |
- | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BRAFLDRAFT_75521 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7739 Amphioxus])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35Å</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6m9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m9y OCA], [http://pdbe.org/6m9y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6m9y RCSB], [http://www.ebi.ac.uk/pdbsum/6m9y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6m9y ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m9y OCA], [https://pdbe.org/6m9y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m9y RCSB], [https://www.ebi.ac.uk/pdbsum/6m9y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m9y ProSAT]</span></td></tr> |
| </table> | | </table> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
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| </div> | | </div> |
| <div class="pdbe-citations 6m9y" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 6m9y" style="background-color:#fffaf0;"></div> |
| + | |
| + | ==See Also== |
| + | *[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Amphioxus]] | + | [[Category: Branchiostoma floridae]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Muslinkina, L]] | + | [[Category: Muslinkina L]] |
- | [[Category: Pletnev, S]] | + | [[Category: Pletnev S]] |
- | [[Category: Pletnev, V]] | + | [[Category: Pletnev V]] |
- | [[Category: Pletneva, N]] | + | [[Category: Pletneva N]] |
- | [[Category: Fluorescent protein]]
| + | |
- | [[Category: Fluorescent protein branchiostoma floridae gly-tyr-ala tripeptide hydrolysis]]
| + | |
| Structural highlights
Publication Abstract from PubMed
GFP-like proteins from lancelets (lanFPs) is a new and least studied group that already generated several outstanding biomarkers (mNeonGreen is the brightest FP to date) and has some unique features. Here, we report the study of four homologous lanFPs with GYG and GYA chromophores. Until recently, it was accepted that the third chromophore-forming residue in GFP-like proteins should be glycine and efforts to replace it were in vain. Now, we have the first structure of a fluorescent protein with a successfully matured chromophore that has alanine as the third chromophore-forming residue. Consideration of the protein structures revealed two alternative routes of posttranslational transformation, resulting in either chromophore maturation or hydrolysis of GYG/GYA tripeptide. Both transformations are catalyzed by the same set of catalytic residues, Arg88 and Glu35-Wat-Glu211 cluster, whereas the residues in positions 62 and 102 shift the equilibrium between chromophore maturation and hydrolysis.
Structural Factors Enabling Successful GFP-Like Proteins with Alanine as the Third Chromophore-Forming Residue.,Muslinkina L, Roldan-Salgado A, Gaytan P, Juarez-Gonzalez VR, Rudino E, Pletneva N, Pletnev V, Dauter Z, Pletnev S J Mol Biol. 2019 Feb 21. pii: S0022-2836(18)31051-9. doi:, 10.1016/j.jmb.2019.02.013. PMID:30797856[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Muslinkina L, Roldan-Salgado A, Gaytan P, Juarez-Gonzalez VR, Rudino E, Pletneva N, Pletnev V, Dauter Z, Pletnev S. Structural Factors Enabling Successful GFP-Like Proteins with Alanine as the Third Chromophore-Forming Residue. J Mol Biol. 2019 Feb 21. pii: S0022-2836(18)31051-9. doi:, 10.1016/j.jmb.2019.02.013. PMID:30797856 doi:http://dx.doi.org/10.1016/j.jmb.2019.02.013
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