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| <StructureSection load='6mas' size='340' side='right'caption='[[6mas]], [[Resolution|resolution]] 1.30Å' scene=''> | | <StructureSection load='6mas' size='340' side='right'caption='[[6mas]], [[Resolution|resolution]] 1.30Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6mas]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Amphioxus Amphioxus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MAS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6MAS FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6mas]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Branchiostoma_floridae Branchiostoma floridae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MAS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6MAS FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CR2</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CR2</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BRAFLDRAFT_75522 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7739 Amphioxus])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6mas FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mas OCA], [https://pdbe.org/6mas PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6mas RCSB], [https://www.ebi.ac.uk/pdbsum/6mas PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6mas ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6mas FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mas OCA], [http://pdbe.org/6mas PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6mas RCSB], [http://www.ebi.ac.uk/pdbsum/6mas PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6mas ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/C3YRA2_BRAFL C3YRA2_BRAFL] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Amphioxus]] | + | [[Category: Branchiostoma floridae]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Muslinkina, L]] | + | [[Category: Muslinkina L]] |
- | [[Category: Pletnev, S]] | + | [[Category: Pletnev S]] |
- | [[Category: Pletnev, V]] | + | [[Category: Pletnev V]] |
- | [[Category: Pletneva, N]] | + | [[Category: Pletneva N]] |
- | [[Category: Fluorescent protein]]
| + | |
- | [[Category: Gly-tyr-gly chromophore]]
| + | |
| Structural highlights
Function
C3YRA2_BRAFL
Publication Abstract from PubMed
GFP-like proteins from lancelets (lanFPs) is a new and least studied group that already generated several outstanding biomarkers (mNeonGreen is the brightest FP to date) and has some unique features. Here, we report the study of four homologous lanFPs with GYG and GYA chromophores. Until recently, it was accepted that the third chromophore-forming residue in GFP-like proteins should be glycine and efforts to replace it were in vain. Now, we have the first structure of a fluorescent protein with a successfully matured chromophore that has alanine as the third chromophore-forming residue. Consideration of the protein structures revealed two alternative routes of posttranslational transformation, resulting in either chromophore maturation or hydrolysis of GYG/GYA tripeptide. Both transformations are catalyzed by the same set of catalytic residues, Arg88 and Glu35-Wat-Glu211 cluster, whereas the residues in positions 62 and 102 shift the equilibrium between chromophore maturation and hydrolysis.
Structural Factors Enabling Successful GFP-Like Proteins with Alanine as the Third Chromophore-Forming Residue.,Muslinkina L, Roldan-Salgado A, Gaytan P, Juarez-Gonzalez VR, Rudino E, Pletneva N, Pletnev V, Dauter Z, Pletnev S J Mol Biol. 2019 Feb 21. pii: S0022-2836(18)31051-9. doi:, 10.1016/j.jmb.2019.02.013. PMID:30797856[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Muslinkina L, Roldan-Salgado A, Gaytan P, Juarez-Gonzalez VR, Rudino E, Pletneva N, Pletnev V, Dauter Z, Pletnev S. Structural Factors Enabling Successful GFP-Like Proteins with Alanine as the Third Chromophore-Forming Residue. J Mol Biol. 2019 Feb 21. pii: S0022-2836(18)31051-9. doi:, 10.1016/j.jmb.2019.02.013. PMID:30797856 doi:http://dx.doi.org/10.1016/j.jmb.2019.02.013
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