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| <StructureSection load='4p16' size='340' side='right'caption='[[4p16]], [[Resolution|resolution]] 2.50Å' scene=''> | | <StructureSection load='4p16' size='340' side='right'caption='[[4p16]], [[Resolution|resolution]] 2.50Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4p16]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_betacoronavirus_2c_emc/2012 Human betacoronavirus 2c emc/2012]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P16 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4P16 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4p16]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_betacoronavirus_2c_EMC/2012 Human betacoronavirus 2c EMC/2012]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4P16 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4P16 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE'>CME</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE'>CME</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">orf1ab ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1235996 Human betacoronavirus 2c EMC/2012])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4p16 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p16 OCA], [https://pdbe.org/4p16 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4p16 RCSB], [https://www.ebi.ac.uk/pdbsum/4p16 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4p16 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4p16 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4p16 OCA], [http://pdbe.org/4p16 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4p16 RCSB], [http://www.ebi.ac.uk/pdbsum/4p16 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4p16 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/K4LC41_9BETC K4LC41_9BETC]] Nsp7-nsp8 hexadecamer may possibly confer processivity to the polymerase, maybe by binding to dsRNA or by producing primers utilized by the latter (By similarity).[SAAS:SAAS014829_004_014545] Nsp9 is a ssRNA-binding protein (By similarity).[SAAS:SAAS014829_004_001449] | + | [https://www.uniprot.org/uniprot/K0BWD0_MERS K0BWD0_MERS] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Human betacoronavirus 2c emc/2012]] | + | [[Category: Human betacoronavirus 2c EMC/2012]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Hilgenfeld, R]] | + | [[Category: Hilgenfeld R]] |
- | [[Category: Lei, J]] | + | [[Category: Lei J]] |
- | [[Category: Ma, Q]] | + | [[Category: Ma Q]] |
- | [[Category: Mesters, J R]] | + | [[Category: Mesters JR]] |
- | [[Category: Deubiquitinase]]
| + | |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Mers-cov]]
| + | |
- | [[Category: Papain-like protease]]
| + | |
| Structural highlights
Function
K0BWD0_MERS
Publication Abstract from PubMed
The Middle-East Respiratory Syndrome coronavirus (MERS-CoV) causes severe acute pneumonia and renal failure. The MERS-CoV papain-like protease (PLpro) is a potential target for the development of antiviral drugs. To facilitate these efforts, we determined the three-dimensional structure of the enzyme by X-ray crystallography. The molecule consists of a ubiquitin-like domain and a catalytic core domain. The catalytic domain displays an extended right-hand fold with a zinc ribbon and embraces a solvent-exposed substrate-binding region. The overall structure of the MERS-CoV PLpro is similar to that of the corresponding SARS-CoV enzyme, but the architecture of the oxyanion hole and of the S3 as well as the S5 specificity sites differ from the latter. These differences are the likely reason for reduced in vitro peptide hydrolysis and deubiquitinating activities of the MERS-CoV PLpro, compared to the homologous enzyme from the SARS coronavirus. Introduction of a side-chain capable of oxyanion stabilization through the Leu106Trp mutation greatly enhances the in vitro catalytic activity of the MERS-CoV PLpro. The unique features observed in the crystal structure of the MERS-CoV PLpro should allow the design of antivirals that would not interfere with host ubiquitin-specific proteases.
Crystal structure of the papain-like protease of MERS coronavirus reveals unusual, potentially druggable active-site features.,Lei J, Mesters JR, Drosten C, Anemuller S, Ma Q, Hilgenfeld R Antiviral Res. 2014 Jun 30;109C:72-82. doi: 10.1016/j.antiviral.2014.06.011. PMID:24992731[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Lei J, Mesters JR, Drosten C, Anemuller S, Ma Q, Hilgenfeld R. Crystal structure of the papain-like protease of MERS coronavirus reveals unusual, potentially druggable active-site features. Antiviral Res. 2014 Jun 30;109C:72-82. doi: 10.1016/j.antiviral.2014.06.011. PMID:24992731 doi:http://dx.doi.org/10.1016/j.antiviral.2014.06.011
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