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Cadherin 3D structures

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(New page: == 3D Structures of Cadherin == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| * CDH5 **2koh – mCDH5+PAR3-...)
Current revision (08:12, 9 November 2022) (edit) (undo)
 
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Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|
{{#tree:id=OrganizedByTopic|openlevels=0|
 +
 +
*CDH1 encoded by CDH1
 +
 +
**[[6cxy]] – hCDH1 + antibody - human<br />
* CDH5
* CDH5
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**[[2a4c]], [[2a4e]] – mCDH11 EC1<br />
**[[2a4c]], [[2a4e]] – mCDH11 EC1<br />
**[[6cgb]] - mCDH11 EC1/CDH6 EC2<br />
**[[6cgb]] - mCDH11 EC1/CDH6 EC2<br />
 +
 +
*CDH encoded by CDH17
 +
 +
**[[6ulm]], [[7ev1]] – hCDH17 EC1-EC2<br />
 +
**[[7cym]] – hCDH17 EC1-EC4<br />
* CDH20
* CDH20
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* CDH23
* CDH23
-
 
+
-
**[[3mvs]], [[2whv]] – mCDH23 N-terminal<br />
+
**[[2kbr]] – hCDH23 peptide+harmonin – NMR <br />
-
**[[2kbr]] – hCDH23 peptide+harmonin – NMR - human<br />
+
**[[2kbs]] - hCDH23 C-terminal peptide+harmonin PDZ2 – NMR<br />
**[[2kbs]] - hCDH23 C-terminal peptide+harmonin PDZ2 – NMR<br />
 +
**[[5wj8]] - hCDH23 EC13-EC14<br />
 +
**[[5vvm]] - hCDH23 EC21-EC23<br />
 +
**[[3mvs]], [[2whv]] – mCDH23 N-terminal<br />
**[[2wbx]] – mCDH23 EC1<br />
**[[2wbx]] – mCDH23 EC1<br />
**[[2wcp]] - mCDH23 EC2<br />
**[[2wcp]] - mCDH23 EC2<br />
**[[2wd0]] - mCDH23 EC1-EC2 (mutant)<br />
**[[2wd0]] - mCDH23 EC1-EC2 (mutant)<br />
-
**[[5w4t]] - CDH23 EC1-EC3 - zebrafish<br />
 
**[[5tfm]] - mCDH23 EC6-EC8<br />
**[[5tfm]] - mCDH23 EC6-EC8<br />
**[[5tfl]] - mCDH23 EC7-EC8<br />
**[[5tfl]] - mCDH23 EC7-EC8<br />
**[[5vh2]] - mCDH23 EC12-EC13 (mutant)<br />
**[[5vh2]] - mCDH23 EC12-EC13 (mutant)<br />
-
**[[5wj8]] - hCDH23 EC13-EC14<br />
+
**[[7skh]] - mCDH23 EC16-EC17<br />
**[[5wjm]] - mCDH23 EC17-EC18<br />
**[[5wjm]] - mCDH23 EC17-EC18<br />
**[[5tfk]] - mCDH23 EC19-EC21<br />
**[[5tfk]] - mCDH23 EC19-EC21<br />
**[[5i8d]], [[5ulu]], [[5un2]] - mCDH23 EC19-EC21 (mutant)<br />
**[[5i8d]], [[5ulu]], [[5un2]] - mCDH23 EC19-EC21 (mutant)<br />
-
**[[5vvm]] - hCDH23 EC21-EC23<br />
 
**[[5uz8]] - mCDH23 EC22-EC24<br />
**[[5uz8]] - mCDH23 EC22-EC24<br />
**[[5vt8]] - mCDH23 EC23-EC25<br />
**[[5vt8]] - mCDH23 EC23-EC25<br />
**[[4apx]], [[4aq8]], [[4axw]], [[4xxw]] - mCDH23 EC1-EC2 + Prot-CDH15<br />
**[[4apx]], [[4aq8]], [[4axw]], [[4xxw]] - mCDH23 EC1-EC2 + Prot-CDH15<br />
-
**[[4aqa]], [[4aqe]] - mCDH23 EC1-EC2 (mutant) + Prot-CDH15
+
**[[4aqa]], [[4aqe]] - mCDH23 EC1-EC2 (mutant) + Prot-CDH15<br />
 +
**[[7n4p]] – CDH23 EC1-EC2 - lizard<br />
 +
**[[7sgx]] – CDH23 EC1-EC2 - turtle<br />
 +
**[[7sb6]], [[7scm]] – CDH23 EC1-EC2 - synthetic<br />
 +
**[[5w4t]] - CDH23 EC1-EC3 - zebrafish<br />
* C-CDH “classical”
* C-CDH “classical”
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**[[1l3w]] – XlC-CDH ectodomain - ''Xenopus laevis''<br />
**[[1l3w]] – XlC-CDH ectodomain - ''Xenopus laevis''<br />
**[[1q5b]], [[1q5c]], [[1q55]], [[1q5a]] – C-CDH model into desmosome – electron tomography<br />
**[[1q5b]], [[1q5c]], [[1q55]], [[1q5a]] – C-CDH model into desmosome – electron tomography<br />
 +
**[[7tni]] - CDH23 EC12 (mutant) – tobacco moth<br />
* E-CDH epithelial or CDH1
* E-CDH epithelial or CDH1
-
**[[1q1p]], [[1ff5]], [[1edh]], [[3lne]], [[3lnf]], [[3lng]], [[3lnh]], [[3lni]], [[2qvf]] – mE-CDH EC1-EC2<br />
 
-
**[[3q2v]] – mE-CDH ectodomain<br />
 
**[[4zt1]], [[2o72]] – hE-CDH EC1-EC2<br />
**[[4zt1]], [[2o72]] – hE-CDH EC1-EC2<br />
**[[4zte]] – hE-CDH EC1-EC2 + inhibitor<br />
**[[4zte]] – hE-CDH EC1-EC2 + inhibitor<br />
-
**[[6fek]] – hE-CDH EC1-EC2 + antibody<br />
+
**[[6fek]], [[6vel]] – hE-CDH EC1-EC2 + antibody<br />
 +
**[[7stz]] – hE-CDH EC1-EC5 + antibody<br />
 +
**[[3ifq]] – hE-CDH EC1-EC3 <br />
 +
**[[3ff7]], [[3ff8]] - hE-CDH EC1-EC3+NK cell receptor<br />
 +
**[[2omt]], [[2omu]], [[2omx]], [[2omz]], [[2omv]], [[2omw]], [[2omy]] – hE-CDH EC1+internalin (mutant)<br />
 +
**[[1q1p]], [[1ff5]], [[1edh]], [[3lne]], [[3lnf]], [[3lng]], [[3lnh]], [[3lni]], [[2qvf]] – mE-CDH EC1-EC2<br />
 +
**[[3q2v]] – mE-CDH ectodomain<br />
**[[1edh]] - mE-CDH EC1-EC2+Ca<br />
**[[1edh]] - mE-CDH EC1-EC2+Ca<br />
**[[3q2l]], [[3q2n]], [[3qrb]] - mE-CDH EC1-EC2 (mutant)<br />
**[[3q2l]], [[3q2n]], [[3qrb]] - mE-CDH EC1-EC2 (mutant)<br />
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**[[1i7x]], [[1i7w]] – mE-CDH cytoplasmic domain +catenin<br />
**[[1i7x]], [[1i7w]] – mE-CDH cytoplasmic domain +catenin<br />
**[[4qd2]] – mE-CDH + botulinum neurotoxin<br />
**[[4qd2]] – mE-CDH + botulinum neurotoxin<br />
-
**[[3ifq]] – hE-CDH EC1-EC3 <br />
 
-
**[[3ff7]], [[3ff8]] - hE-CDH EC1-EC3+NK cell receptor<br />
 
-
**[[2omt]], [[2omu]], [[2omx]], [[2omz]], [[2omv]], [[2omw]], [[2omy]] – hE-CDH EC1+internalin (mutant)<br />
 
**[[1o6s]] – E-CDH N-terminal+internalin – ''Listeria monocytogenes''<br />
**[[1o6s]] – E-CDH N-terminal+internalin – ''Listeria monocytogenes''<br />
-
**[[4qd2]] – mE-CDH + botulinum neurotoxin<br />
 
*K-CDH kidney or CDH6
*K-CDH kidney or CDH6
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* T-CDH membrane bound
* T-CDH membrane bound
 +
**[[2v37]] – hT-CDH N-terminal - NMR<br />
**[[3k5r]], [[6cg6]] – mT-CDH EC1-EC2<br />
**[[3k5r]], [[6cg6]] – mT-CDH EC1-EC2<br />
-
**[[3k5s]] - cT-CDH EC1-EC2 <br />
 
-
**[[3k6d]] - XlT-CDH EC1 <br />
 
**[[3k6f]] - mT-CDH EC1<br />
**[[3k6f]] - mT-CDH EC1<br />
 +
**[[3k5s]] - cT-CDH EC1-EC2 <br />
**[[3k6i]] - cT-CDH EC1<br />
**[[3k6i]] - cT-CDH EC1<br />
-
**[[2v37]] – hT-CDH N-terminal - NMR<br />
+
**[[3k6d]] - XlT-CDH EC1 <br />
* N-CDH neuronal
* N-CDH neuronal
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*P-CDH placental or CDH3
*P-CDH placental or CDH3
-
**[[4nqq]] – mP-CDH EC1-EC2<br />
+
**[[4oy9]], [[4zml]], [[4zmn]], [[4zmq]], [[4zmt]], [[4zmw]], [[4zmz]], [[6ztb]] – hP-CDH EC1-EC2 residues 108-324<br />
-
**[[4oy9]], [[4zml]], [[4zmn]], [[4zmq]], [[4zmt]], [[4zmw]], [[4zmz]] – hP-CDH EC1-EC2<br />
+
**[[4zmo]], [[4zmp]], [[4zmv]], [[4zmx]], [[4zmy]] – hP-CDH EC1-EC2 (mutant)<br />
**[[4zmo]], [[4zmp]], [[4zmv]], [[4zmx]], [[4zmy]] – hP-CDH EC1-EC2 (mutant)<br />
**[[5jyl]], [[5jym]] – hP-CDH EC1-EC2 + SCFV TSP7<br />
**[[5jyl]], [[5jym]] – hP-CDH EC1-EC2 + SCFV TSP7<br />
 +
**[[6ztr]] – hP-CDH EC1-EC2 + antibody<br />
 +
**[[7cme]], [[7cmf]] – hP-CDH EC1-EC2 + inhibitor<br />
 +
**[[4nqq]] – mP-CDH EC1-EC2<br />
*VE-CDH vascular epithelial
*VE-CDH vascular epithelial
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* Protocadherin
* Protocadherin
-
**[[6bx7]] - hProt-CDH1 EC1-EC4<br />
+
**[[6bx7]], [[6mga]], [[6vfp]] - hProt-CDH1 EC1-EC4<br />
**[[2yst]] – hProt-CDH7 EC3 – NMR<br />
**[[2yst]] – hProt-CDH7 EC3 – NMR<br />
 +
**[[6pim]] - hProt-CDH1 EC3-EC4<br />
 +
**[[6vfv]] - hProt-CDH8 EC5-EC6<br />
**[[2ee0]] - hProt-CDH9 Ca domain – NMR<br />
**[[2ee0]] - hProt-CDH9 Ca domain – NMR<br />
 +
**[[6vfq]], [[6vfw]] - hProt-CDH10 EC1-EC4 <br />
 +
**[[6vg4]] - hProt-CDH10 ectodomain <br />
 +
**[[6n22]] - hProt-CDH15 EC1-EC2 <br />
 +
**[[6n2e]] - hProt-CDH15 EC1-EC2 + mCDH23<br />
 +
**[[6mfo]] - hProt-CDH15 EC1-EC3 (mutant) <br />
 +
**[[6eb5]] - hProt-CDH15 EC2-EC3 (mutant) <br />
 +
**[[6e8f]] - hProt-CDH15 EC3-EC5<br />
 +
**[[5t4n]] - hProt-CDH15 EC3-EC5 (mutant) <br />
 +
**[[6vft]] - hProt-CDH17 EC1-EC4 <br />
 +
**[[6vfr]] - hProt-CDH18 EC1-EC4 <br />
 +
**[[6vfu]] - hProt-CDH19 EC1-EC4 <br />
 +
**[[7n86]] - hProt-CDH24 EC1-EC2 <br />
 +
**[[6meq]], [[6mer]] - hProt-CDH1 g B3 EC1-EC4 <br />
 +
**[[6c13]] - mProt-CDH15 – Cryo EM<br />
**[[1wyj]] - mProt-CDH β 14 - NMR<br />
**[[1wyj]] - mProt-CDH β 14 - NMR<br />
**[[1wuz]] - mProt-CDH4 EC1 – NMR<br />
**[[1wuz]] - mProt-CDH4 EC1 – NMR<br />
-
**[[5cyx]] - mProt-CDH2 EC1+EC2+EC3<br />
+
**[[5cyx]], [[6cv7]] - mProt-CDH2 EC1+EC2+EC3<br />
 +
**[[6bxu]] - mProt-CDH15 EC5-EC7 (mutant)<br />
 +
**[[6bwn]] - mProt-CDH15 EC6-EC7<br />
 +
**[[5tpk]] - mProt-CDH15 EC7-EC8 (mutant)<br />
 +
**[[6c10]] - mProt-CDH15 EC11<br />
 +
**[[6eet]] - mProt-CDH2 EC9<br />
**[[5szl]] - mProt-CDH γ A1 EC1-EC4<br />
**[[5szl]] - mProt-CDH γ A1 EC1-EC4<br />
 +
**[[5t9t]] - mProt-CDH γ B2 EC1-EC5<br />
 +
**[[6e6b]] - mProt-CDH γ B4 EC domain<br />
 +
**[[5v5x]] - mProt-CDH γ B7 EC3-EC6<br />
 +
**[[7jgz]], [[7rgf]] - mProt-CDH gamma C4 EC1-EC4<br />
 +
**[[6vg1]] - Prot-CDH 8.1 EC1-EC6 - frog<br />
 +
**[[6pgw]] - zProt-CDH19 EC3-EC6 <br />
* Desmoglein
* Desmoglein
-
**[[2yqg]] – hDes-CDH2 EC1<br />
+
**[[2yqg]] – hDes-2 EC1 47-162<br />
-
**[[5erd]] – hDes-CDH2 ectodomain<br />
+
**[[5erd]] – hDes-2 ectodomain 50-602<br />
-
**[[5eqx]] – hDes-CDH3 ectodomain<br />
+
**[[5eqx]] – hDes-3 ectodomain<br />
-
**[[6qnt]], [[6qnu]] – hDesmc2 ectodomain + adenovirus fiber protein – Cryo EM<br />
+
**[[6sit]] – hDes2 EC2-EC3 149-386 + adenovirus fiber protein <br />
 +
**[[6qnt]], [[6qnu]], [[7agf]], [[7agg]] – hDesmc2 ectodomain + adenovirus fiber protein – Cryo EM<br />
 +
**[[7a7d]] – hDes-2 + desmocollin-2 – Cryo EM<br />
*Desmocollin
*Desmocollin
**[[5iry]] – hDesmc1 ectodomain<br />
**[[5iry]] – hDesmc1 ectodomain<br />
-
**[[5erp]], [[5j5j]] – hDesmc2 ectodomain<br />
+
**[[5erp]] – hDesmc2 EC2-EC5<br />
-
 
+
**[[5j5j]] – hDesmc2 EC1 + Des-2 EC2-EC5<br />
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

3D Structures of Cadherin

Updated on 09-November-2022

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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