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| | <StructureSection load='6if7' size='340' side='right'caption='[[6if7]], [[Resolution|resolution]] 2.20Å' scene=''> | | <StructureSection load='6if7' size='340' side='right'caption='[[6if7]], [[Resolution|resolution]] 2.20Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6if7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Tectaria_macrodonta Tectaria macrodonta]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IF7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IF7 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6if7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Tectaria_macrodonta Tectaria macrodonta]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IF7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6IF7 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CBS:DI(N-ACETYL-D-GLUCOSAMINE)'>CBS</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6if7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6if7 OCA], [http://pdbe.org/6if7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6if7 RCSB], [http://www.ebi.ac.uk/pdbsum/6if7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6if7 ProSAT]</span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6if7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6if7 OCA], [https://pdbe.org/6if7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6if7 RCSB], [https://www.ebi.ac.uk/pdbsum/6if7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6if7 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/W5QLL4_9MONI W5QLL4_9MONI] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </div> | | </div> |
| | <div class="pdbe-citations 6if7" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 6if7" style="background-color:#fffaf0;"></div> |
| | + | |
| | + | ==See Also== |
| | + | *[[Monooxygenase 3D structures|Monooxygenase 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
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| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| | [[Category: Tectaria macrodonta]] | | [[Category: Tectaria macrodonta]] |
| - | [[Category: Archana, A]] | + | [[Category: Archana A]] |
| - | [[Category: Singh, P K]] | + | [[Category: Singh PK]] |
| - | [[Category: Vasudev, P G]] | + | [[Category: Vasudev PG]] |
| - | [[Category: Yadav, S K]] | + | [[Category: Yadav SK]] |
| - | [[Category: Chitin-binding]]
| + | |
| - | [[Category: Insecticidal]]
| + | |
| - | [[Category: Lpmo]]
| + | |
| - | [[Category: Sugar binding protein]]
| + | |
| Structural highlights
6if7 is a 1 chain structure with sequence from Tectaria macrodonta. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
| | Method: | X-ray diffraction, Resolution 2.2Å |
| Ligands: | , , , , , , |
| Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT |
Function
W5QLL4_9MONI
Publication Abstract from PubMed
MAIN CONCLUSION: Amino acid sequence and crystal structure analyses of Tma12, an insecticidal protein isolated from the fern Tectaria macrodonta, identify it as a carbohydrate-binding protein belonging to the AA10 family of lytic polysaccharide monooxygenases, and provide the first evidence of AA10 proteins in plants. Tma12, isolated from the fern Tectaria macrodonta, is a next-generation insecticidal protein. Transgenic cotton expressing Tma12 exhibits resistance against whitefly and viral diseases. Beside its insecticidal property, the structure and function of Tma12 are unknown. This limits understanding of the insecticidal mechanism of the protein and targeted improvement in its efficacy. Here we report the amino acid sequence analysis and the crystal structure of Tma12, suggesting that it is possibly a lytic polysaccharide monooxygenase (LPMO) of the AA10 family. Amino acid sequence of Tma12 shows 45% identity with a cellulolytic LPMO of Streptomyces coelicolor. The crystal structure of Tma12, obtained at 2.2 A resolution, possesses all the major structural characteristics of AA10 LPMOs. A H2O2-based enzymatic assay also supports this finding. It is the first report of the occurrence of LPMO-like protein in a plant. The two facts that Tma12 possesses insecticidal activity and shows structural similarity with LPMOs collectively advocate exploration of microbial LPMOs for insecticidal potential.
Insecticidal fern protein Tma12 is possibly a lytic polysaccharide monooxygenase.,Yadav SK, Archana, Singh R, Singh PK, Vasudev PG Planta. 2019 Mar 22. pii: 10.1007/s00425-019-03135-0. doi:, 10.1007/s00425-019-03135-0. PMID:30903269[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Yadav SK, Archana, Singh R, Singh PK, Vasudev PG. Insecticidal fern protein Tma12 is possibly a lytic polysaccharide monooxygenase. Planta. 2019 Mar 22. pii: 10.1007/s00425-019-03135-0. doi:, 10.1007/s00425-019-03135-0. PMID:30903269 doi:http://dx.doi.org/10.1007/s00425-019-03135-0
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