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| | <StructureSection load='4qhc' size='340' side='right'caption='[[4qhc]], [[Resolution|resolution]] 1.90Å' scene=''> | | <StructureSection load='4qhc' size='340' side='right'caption='[[4qhc]], [[Resolution|resolution]] 1.90Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4qhc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Myctu Myctu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QHC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4QHC FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4qhc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QHC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4QHC FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=33V:(3R,6R,7S)-7-[(2R,3AR)-HEXAHYDROPYRAZOLO[1,5-C][1,3]THIAZIN-2-YL]-6-(HYDROXYMETHYL)-1,4-THIAZEPANE-3-CARBOXYLIC+ACID'>33V</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.899Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4df6|4df6]], [[4q8i|4q8i]], [[4qb8|4qb8]]</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=33V:(3R,6R,7S)-7-[(2R,3AR)-HEXAHYDROPYRAZOLO[1,5-C][1,3]THIAZIN-2-YL]-6-(HYDROXYMETHYL)-1,4-THIAZEPANE-3-CARBOXYLIC+ACID'>33V</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">blaA, blaC, Rv2068c, MTCY49.07c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 MYCTU])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4qhc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qhc OCA], [https://pdbe.org/4qhc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4qhc RCSB], [https://www.ebi.ac.uk/pdbsum/4qhc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4qhc ProSAT]</span></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-lactamase Beta-lactamase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.6 3.5.2.6] </span></td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qhc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qhc OCA], [http://pdbe.org/4qhc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4qhc RCSB], [http://www.ebi.ac.uk/pdbsum/4qhc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4qhc ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| - | <div style="background-color:#fffaf0;">
| + | == Function == |
| - | == Publication Abstract from PubMed == | + | [https://www.uniprot.org/uniprot/BLAC_MYCTU BLAC_MYCTU] |
| - | Mycobacterium tuberculosis is intrinsically resistant to most beta-lactam antibiotics because of the constitutive expression of the blaC-encoded beta-lactamase. This enzyme has extremely high activity against penicillins and cephalosporins, but weaker activity against carbapenems. The enzyme can be inhibited by clavulanate, avibactam, and boronic acids. In this study, we investigated the ability of 6-methylidene beta-lactams to inhibit BlaC. One such compound, penem 2, inhibited BlaC more than 70 times more efficiently than clavulanate. The compound forms a covalent complex with BlaC as shown by mass spectrometry. Crystallization of the complex revealed that the bound inhibitor was covalently attached via the Ser70 active site residue and that the covalently, acylated form of the inhibitor had undergone additional chemistry yielding a 4,7-thiazepine ring in place of the beta-lactam and a thiazapyroline ring generated as a result of beta-lactam ring opening. The stereochemistry of the product of the 7-endo-trig cyclization was the opposite of that observed previously for class A and D beta-lactamases. Addition of penem 2 greatly synergized the antibacterial properties of both ampicillin and meropenem against a growing culture of M. tuberculosis. Strikingly, penem 2 alone showed significant growth inhibition, suggesting that in addition to its capability of efficiently inhibiting BlaC, it also inhibited the peptidoglycan cross-linking transpeptidases.
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| - | Kinetic and Structural Characterization of the Interaction of 6-Methylidene Penem 2 with the beta-Lactamase from Mycobacterium tuberculosis.,Hazra S, Kurz SG, Wolff K, Nguyen L, Bonomo RA, Blanchard JS Biochemistry. 2015 Sep 15;54(36):5657-64. doi: 10.1021/acs.biochem.5b00698. Epub , 2015 Aug 31. PMID:26237118<ref>PMID:26237118</ref>
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| - | | + | |
| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
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| - | </div>
| + | |
| - | <div class="pdbe-citations 4qhc" style="background-color:#fffaf0;"></div>
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| | | | |
| | ==See Also== | | ==See Also== |
| | *[[Beta-lactamase 3D structures|Beta-lactamase 3D structures]] | | *[[Beta-lactamase 3D structures|Beta-lactamase 3D structures]] |
| - | == References == | |
| - | <references/> | |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Beta-lactamase]] | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Myctu]] | + | [[Category: Mycobacterium tuberculosis H37Rv]] |
| - | [[Category: Blanchard, J]] | + | [[Category: Blanchard J]] |
| - | [[Category: Hazra, S]] | + | [[Category: Hazra S]] |
| - | [[Category: 3-layer sandwich]]
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| - | [[Category: Beta-lactamase super family]]
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| - | [[Category: Betalactam]]
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| - | [[Category: Betalactamase]]
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| - | [[Category: Dd-peptidase]]
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| - | [[Category: Drug resistance]]
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| - | [[Category: Hydrolase-hydrolase inhibitor complex]]
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| - | [[Category: Novel mechanism]]
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| - | [[Category: Penem]]
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| - | [[Category: Qm/mm]]
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