This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4qpd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:59, 20 March 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 3: Line 3:
<StructureSection load='4qpd' size='340' side='right'caption='[[4qpd]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='4qpd' size='340' side='right'caption='[[4qpd]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4qpd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Brachidanio_rerio Brachidanio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QPD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4QPD FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4qpd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QPD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4QPD FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=THG:(6S)-5,6,7,8-TETRAHYDROFOLATE'>THG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ts4|4ts4]], [[4tt8|4tt8]], [[4tts|4tts]], [[4qpc|4qpc]], [[4r8v|4r8v]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=THG:(6S)-5,6,7,8-TETRAHYDROFOLATE'>THG</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">aldh1l1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7955 Brachidanio rerio])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4qpd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qpd OCA], [https://pdbe.org/4qpd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4qpd RCSB], [https://www.ebi.ac.uk/pdbsum/4qpd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4qpd ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Formyltetrahydrofolate_dehydrogenase Formyltetrahydrofolate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.1.6 1.5.1.6] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qpd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qpd OCA], [http://pdbe.org/4qpd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4qpd RCSB], [http://www.ebi.ac.uk/pdbsum/4qpd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4qpd ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/E3NZ06_DANRE E3NZ06_DANRE]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Brachidanio rerio]]
+
[[Category: Danio rerio]]
-
[[Category: Formyltetrahydrofolate dehydrogenase]]
+
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Chang, W N]]
+
[[Category: Chang WN]]
-
[[Category: Chen, C J]]
+
[[Category: Chen CJ]]
-
[[Category: Chuankhayan, P]]
+
[[Category: Chuankhayan P]]
-
[[Category: Fu, T F]]
+
[[Category: Fu TF]]
-
[[Category: Kao, T T]]
+
[[Category: Kao TT]]
-
[[Category: Lin, C C]]
+
[[Category: Lin CC]]
-
[[Category: 10-formyltetrahydrofolate dehydrogenase]]
+
-
[[Category: Catalysis]]
+
-
[[Category: Hydrolase domain]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal structure of the hydrolase domain of 10-formyltetrahydrofolate dehydrogenase (wild-type) complex with tetrahydrofolate

PDB ID 4qpd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools