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| | <StructureSection load='4r1z' size='340' side='right'caption='[[4r1z]], [[Resolution|resolution]] 3.30Å' scene=''> | | <StructureSection load='4r1z' size='340' side='right'caption='[[4r1z]], [[Resolution|resolution]] 3.30Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4r1z]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4R1Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4R1Z FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4r1z]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4R1Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4R1Z FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AER:ABIRATERONE'>AER</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.3Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4r20|4r20]], [[4r21|4r21]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AER:ABIRATERONE'>AER</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4r1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4r1z OCA], [http://pdbe.org/4r1z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4r1z RCSB], [http://www.ebi.ac.uk/pdbsum/4r1z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4r1z ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4r1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4r1z OCA], [https://pdbe.org/4r1z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4r1z RCSB], [https://www.ebi.ac.uk/pdbsum/4r1z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4r1z ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/B3DH80_DANRE B3DH80_DANRE] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | [[Category: Danio rerio]] | | [[Category: Danio rerio]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Egli, M]] | + | [[Category: Egli M]] |
| - | [[Category: Pallan, P S]] | + | [[Category: Pallan PS]] |
| - | [[Category: 20-lyase]]
| + | |
| - | [[Category: Abiraterone]]
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| - | [[Category: Cytochrome p450 17a1]]
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| - | [[Category: Enzyme kinetic]]
| + | |
| - | [[Category: Oxidoreductase]]
| + | |
| - | [[Category: Steroid biosynthesis]]
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| Structural highlights
Function
B3DH80_DANRE
Publication Abstract from PubMed
Cytochrome P450 (P450) 17A enzymes play a critical role in the oxidation of the steroids progesterone (Prog) and pregnenolone (Preg) to glucocorticoids and androgens. In mammals, a single enzyme, P450 17A1, catalyzes both 17alpha-hydroxylation and a subsequent 17alpha,20-lyase reaction with both Prog and Preg. Teleost fish contain two 17A P450s; zebrafish P450 17A1 catalyzes both 17alpha-hydroxylation and lyase reactions with Prog and Preg, and P450 17A2 is more efficient in pregnenolone 17alpha-hydroxylation but does not catalyze the lyase reaction, even in the presence of cytochrome b5. P450 17A2 binds all substrates and products, although more loosely than P450 17A1. Pulse-chase and kinetic spectral experiments and modeling established that the two-step P450 17A1 Prog oxidation is more distributive than the Preg reaction, i.e. 17alpha-OH product dissociates more prior to the lyase step. The drug orteronel selectively blocked the lyase reaction of P450 17A1 but only in the case of Prog. X-ray crystal structures of zebrafish P450 17A1 and 17A2 were obtained with the ligand abiraterone and with Prog for P450 17A2. Comparison of the two fish P450 17A-abiraterone structures with human P450 17A1 (DeVore, N. M., and Scott, E. E. (2013) Nature 482, 116-119) showed only a few differences near the active site, despite only approximately 50% identity among the three proteins. The P450 17A2 structure differed in four residues near the heme periphery. These residues may allow the proposed alternative ferric peroxide mechanism for the lyase reaction, or residues removed from the active site may allow conformations that lead to the lyase activity.
Structural and Kinetic Basis of Steroid 17alpha,20-Lyase Activity in Teleost Fish Cytochrome P450 17A1 and Its Absence in Cytochrome P450 17A2.,Pallan PS, Nagy LD, Lei L, Gonzalez E, Kramlinger VM, Azumaya CM, Wawrzak Z, Waterman MR, Guengerich FP, Egli M J Biol Chem. 2015 Feb 6;290(6):3248-68. doi: 10.1074/jbc.M114.627265. Epub 2014, Dec 22. PMID:25533464[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Pallan PS, Nagy LD, Lei L, Gonzalez E, Kramlinger VM, Azumaya CM, Wawrzak Z, Waterman MR, Guengerich FP, Egli M. Structural and Kinetic Basis of Steroid 17alpha,20-Lyase Activity in Teleost Fish Cytochrome P450 17A1 and Its Absence in Cytochrome P450 17A2. J Biol Chem. 2015 Feb 6;290(6):3248-68. doi: 10.1074/jbc.M114.627265. Epub 2014, Dec 22. PMID:25533464 doi:http://dx.doi.org/10.1074/jbc.M114.627265
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