User:Lukáš Hodboď

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* Full Real Name:
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== 2k21 ==
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Lukáš Hodboď
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<StructureSection load='2k21' size='340' side='right' caption='[[2k21]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
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* Position:
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== Structural highlights ==
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Student
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<table><tr><td colspan='2'>[[2k21]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K21 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K21 FirstGlance]. <br>
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* Institution (NO ABBREVIATIONS):
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</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">KCNE1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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Přírodovědecká fakulta Univerzity Karlovy
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k21 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k21 OCA], [http://pdbe.org/2k21 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2k21 RCSB], [http://www.ebi.ac.uk/pdbsum/2k21 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2k21 ProSAT]</span></td></tr>
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* City, State/Province, Country:
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</table>
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Prague, Czechia
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== Disease ==
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* Field of Expertise or Study:
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[[https://www.uniprot.org/uniprot/KCNE1_HUMAN KCNE1_HUMAN]] Mutations in KCNE1 cause long QT syndrome type 5 (LQT5) [MIM:[http://omim.org/entry/613695 613695]].
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Molecular biology, 1st grade of bc study
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Congenital long QT syndrome is electrocardiographically characterized by a prolonged QT interval and polymorphic ventricular arrhythmias (torsade de pointes). These cardiac arrhythmias may result in recurrent syncope, seizure, or sudden death. <ref> PMID: 10220144 </ref>
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Mutations in KCNE1 are the cause of Jervell and Lange-Nielsen syndrome type 2 (JLNS2)[MIM:[http://omim.org/entry/612347 612347]].
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The Jervell and Lange-Nielsen syndrome is an autosomal recessive disorder characterized by congenital deafness, prolongation of the QT interval, syncopal attacks due to ventricular arrhythmias, and a high risk of sudden death. <ref> PMID:13435203 </ref>
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These mutations inhibit the ability of KCNE1 to form fully functional IKs channels. Mutation that disrupts the N5 sequon of KCNE1 protein hinders its glycosylation,
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leading to the formation of channels that are unable of proper cell surface expression due to defect in anterograde trafficking. <ref>PMID:9354783</ref> <ref>PMID:9328483</ref> <ref>PMID:21676880</ref> <ref>PMID:9354802</ref> <ref>PMID:9445165</ref> <ref>PMID:10973849</ref> <ref>PMID:11692163 </ref> <ref>PMID:19716085</ref><ref>PMID:</ref>
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Mutations in KCNE1 may be a cause for hightened susceptibility to the Noise-Induced Hearing Loss. <ref>PMID:16823764</ref>
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== Function ==
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KCNE1 and KVLQT1 protein products coassemble to form the cardiac I(Ks) channel. <ref>PMID:8900283</ref> Through the formation of heteromeric channel complexes, KCNE1 is central to the control of the heart rate and rhythm. <ref>PMID:9230439</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k2/2k21_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2k21 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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KCNE1 is a single-span membrane protein that modulates the voltage-gated potassium channel KCNQ1 (K V7.1) by slowing activation and enhancing channel conductance to generate the slow delayed rectifier current ( I Ks) that is critical for the repolarization phase of the cardiac action potential. Perturbation of channel function by inherited mutations in KCNE1 or KCNQ1 results in increased susceptibility to cardiac arrhythmias and sudden death with or without accompanying deafness. Here, we present the three-dimensional structure of KCNE1. The transmembrane domain (TMD) of KCNE1 is a curved alpha-helix and is flanked by intra- and extracellular domains comprised of alpha-helices joined by flexible linkers. Experimentally restrained docking of the KCNE1 TMD to a closed state model of KCNQ1 suggests that KCNE1 slows channel activation by sitting on and restricting the movement of the S4-S5 linker that connects the voltage sensor to the pore domain. We postulate that this is an adhesive interaction that must be disrupted before the channel can be opened in response to membrane depolarization. Docking to open KCNQ1 indicates that the extracellular end of the KCNE1 TMD forms an interface with an intersubunit cleft in the channel that is associated with most known gain-of-function disease mutations. Binding of KCNE1 to this "gain-of-function cleft" may explain how it increases conductance and stabilizes the open state. These working models for the KCNE1-KCNQ1 complexes may be used to formulate testable hypotheses for the molecular bases of disease phenotypes associated with the dozens of known inherited mutations in KCNE1 and KCNQ1.
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Structure of KCNE1 and implications for how it modulates the KCNQ1 potassium channel.,Kang C, Tian C, Sonnichsen FD, Smith JA, Meiler J, George AL Jr, Vanoye CG, Kim HJ, Sanders CR Biochemistry. 2008 Aug 5;47(31):7999-8006. Epub 2008 Jul 9. PMID:18611041<ref>PMID:18611041</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2k21" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Human]]
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[[Category: George, A L]]
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[[Category: Kang, C]]
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[[Category: Kim, H]]
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[[Category: Meiler, J]]
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[[Category: Sanders, C R]]
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[[Category: Smith, J A]]
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[[Category: Sonnichsen, F D]]
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[[Category: Tian, C]]
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[[Category: Vanoye, C G]]
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[[Category: Auxilliary subunit]]
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[[Category: Ion transport]]
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[[Category: Ionic channel]]
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[[Category: Kcne1]]
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[[Category: Membrane protein]]
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[[Category: Micelle]]
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[[Category: Mink]]
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[[Category: Potassium channel]]
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[[Category: Potassium transport]]
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[[Category: Transmembrane]]
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[[Category: Transport]]
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[[Category: Voltage-gated channel]]

Current revision

2k21

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Proteopedia Page Contributors and Editors (what is this?)

Lukáš Hodboď, Eric Martz

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