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| | <StructureSection load='4r9f' size='340' side='right'caption='[[4r9f]], [[Resolution|resolution]] 1.40Å' scene=''> | | <StructureSection load='4r9f' size='340' side='right'caption='[[4r9f]], [[Resolution|resolution]] 1.40Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4r9f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_baa-17 Atcc baa-17]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4R9F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4R9F FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4r9f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Caldanaerobius_polysaccharolyticus Caldanaerobius polysaccharolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4R9F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4R9F FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4Å</td></tr> |
| - | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PRD_900115:4beta-beta-mannobiose'>PRD_900115</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4r9g|4r9g]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4r9f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4r9f OCA], [https://pdbe.org/4r9f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4r9f RCSB], [https://www.ebi.ac.uk/pdbsum/4r9f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4r9f ProSAT]</span></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">mbp1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=44256 ATCC BAA-17])</td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4r9f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4r9f OCA], [http://pdbe.org/4r9f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4r9f RCSB], [http://www.ebi.ac.uk/pdbsum/4r9f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4r9f ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/L0E2M2_9THEO L0E2M2_9THEO] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Atcc baa-17]] | + | [[Category: Caldanaerobius polysaccharolyticus]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Agarwal, V]] | + | [[Category: Agarwal V]] |
| - | [[Category: Chekan, J R]] | + | [[Category: Chekan JR]] |
| - | [[Category: Nair, S K]] | + | [[Category: Nair SK]] |
| - | [[Category: Mannan binding protein]]
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| - | [[Category: Sugar binding protein]]
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| Structural highlights
Function
L0E2M2_9THEO
Publication Abstract from PubMed
Hemicelluloses, the polysaccharide component of plant cell walls, represent one of the most abundant biopolymers in nature. The most common hemicellulosic constituents of softwoods, such conifers and cycads, are mannans consisting of a 1,4 linked beta-mannopyranosyl main chain with branch decorations. Efforts towards the utilization of hemicellulose for bioconversion into cellulosic biofuels have resulted in the identification of several families of glycoside hydrolases that can degrade mannan. However, effective biofermentation of manno-oligosaccharides is limited by a lack of appropriate uptake route in ethanologenic organisms. Here, we identify a mannan utilization gene cluster in the thermophilic bacterium Caldanaerobius polysaccharolyticus. The cluster contains several enzymes for the efficient mannan hydrolysis, as well as an unusual ABC transporter that shows an unexpected specificity for both linear and branched manno-oligosaccharides. Calorimetric analysis of the solute-binding component of the transporter (CpMnBP1) reveals high specificity for short mannose polymers, but with flexibility to accommodate polysaccharide decorations. Co-crystal structures of CpMnBP1 in complex with mannobiose (1.4 A resolution) and mannotriose (2.2 A resolution) reveal the molecular rationale for chain-length, oligosaccharide specificity. This work represents the first biochemical characterization of a mannose-specific solute binding protein, and provides a framework for engineering mannan utilization capabilities for microbial fermentation.
Structural and Biochemical Basis for Mannan Utilization by Caldanaerobius polysaccharolyticus strain ATCC BAA-17.,Chekan JR, Kwon IH, Agarwal V, Dodd D, Revindran V, Mackie RI, Cann I, Nair SK J Biol Chem. 2014 Oct 23. pii: jbc.M114.579904. PMID:25342756[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Chekan JR, Kwon IH, Agarwal V, Dodd D, Revindran V, Mackie RI, Cann I, Nair SK. Structural and Biochemical Basis for Mannan Utilization by Caldanaerobius polysaccharolyticus strain ATCC BAA-17. J Biol Chem. 2014 Oct 23. pii: jbc.M114.579904. PMID:25342756 doi:http://dx.doi.org/10.1074/jbc.M114.579904
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