This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4rdx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:14, 8 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='4rdx' size='340' side='right'caption='[[4rdx]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
<StructureSection load='4rdx' size='340' side='right'caption='[[4rdx]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4rdx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet2 Thet2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RDX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4RDX FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4rdx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB27 Thermus thermophilus HB27]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RDX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4RDX FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=HIS:HISTIDINE'>HIS</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.55&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=HIS:HISTIDINE'>HIS</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">hisS, TT_C0360 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=262724 THET2])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4rdx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4rdx OCA], [https://pdbe.org/4rdx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4rdx RCSB], [https://www.ebi.ac.uk/pdbsum/4rdx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4rdx ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Histidine--tRNA_ligase Histidine--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.21 6.1.1.21] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4rdx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4rdx OCA], [http://pdbe.org/4rdx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4rdx RCSB], [http://www.ebi.ac.uk/pdbsum/4rdx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4rdx ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SYH_THET2 SYH_THET2]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 27: Line 27:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Histidine--tRNA ligase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Thet2]]
+
[[Category: Thermus thermophilus HB27]]
-
[[Category: Tian, Q]]
+
[[Category: Tian Q]]
-
[[Category: Wang, C]]
+
[[Category: Wang C]]
-
[[Category: Xie, W]]
+
[[Category: Xie W]]
-
[[Category: Aminoacyl-trna synthetase]]
+
-
[[Category: Aminoacylation]]
+
-
[[Category: Classii aar]]
+
-
[[Category: Histidine]]
+
-
[[Category: Ligase-rna complex]]
+
-
[[Category: Trna]]
+

Current revision

Structure of histidinyl-tRNA synthetase in complex with tRNA(His)

PDB ID 4rdx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4rdx"
Personal tools