4rgz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:52, 1 March 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='4rgz' size='340' side='right'caption='[[4rgz]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
<StructureSection load='4rgz' size='340' side='right'caption='[[4rgz]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4rgz]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thesm Thesm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RGZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4RGZ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4rgz]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_sibiricus_MM_739 Thermococcus sibiricus MM 739]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RGZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4RGZ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4fkc|4fkc]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TSIB_0821 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=604354 THESM])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4rgz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4rgz OCA], [https://pdbe.org/4rgz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4rgz RCSB], [https://www.ebi.ac.uk/pdbsum/4rgz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4rgz ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4rgz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4rgz OCA], [http://pdbe.org/4rgz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4rgz RCSB], [http://www.ebi.ac.uk/pdbsum/4rgz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4rgz ProSAT]</span></td></tr>
+
</table>
</table>
-
<div style="background-color:#fffaf0;">
+
== Function ==
-
== Publication Abstract from PubMed ==
+
[https://www.uniprot.org/uniprot/C6A2N7_THESM C6A2N7_THESM]
-
The crystal structure of recombinant prolidase from Thermococcus sibiricus was determined by X-ray diffraction at a resolution of 2.6 A and was found to contain a tetramer in the asymmetric unit. A protein crystal grown in microgravity using the counter-diffusion method was used for X-ray studies. The crystal belonged to space group P21221, with unit-cell parameters a = 97.60, b = 123.72, c = 136.52 A, alpha = beta = gamma = 90 degrees . The structure was refined to an Rcryst of 22.1% and an Rfree of 29.6%. The structure revealed flexible folding of the N-terminal domain of the protein as well as high variability in the positions of the bound metal ions. The coordinates of the resulting model were deposited in the Protein Data Bank as entry 4rgz.
+
-
 
+
-
Structure of recombinant prolidase from Thermococcus sibiricus in space group P21221.,Timofeev V, Slutskaya E, Gorbacheva M, Boyko K, Rakitina T, Korzhenevskiy D, Lipkin A, Popov V Acta Crystallogr F Struct Biol Commun. 2015 Aug 1;71(Pt 8):951-7. doi:, 10.1107/S2053230X15009498. Epub 2015 Jul 28. PMID:26249680<ref>PMID:26249680</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 4rgz" style="background-color:#fffaf0;"></div>
+
==See Also==
==See Also==
*[[Aminopeptidase 3D structures|Aminopeptidase 3D structures]]
*[[Aminopeptidase 3D structures|Aminopeptidase 3D structures]]
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Thesm]]
+
[[Category: Thermococcus sibiricus MM 739]]
-
[[Category: Boyko, K M]]
+
[[Category: Boyko KM]]
-
[[Category: Gorbacheva, M A]]
+
[[Category: Gorbacheva MA]]
-
[[Category: Korgenevsky, D A]]
+
[[Category: Korgenevsky DA]]
-
[[Category: Lipkin, A V]]
+
[[Category: Lipkin AV]]
-
[[Category: Popov, V O]]
+
[[Category: Popov VO]]
-
[[Category: Rakitina, T V]]
+
[[Category: Rakitina TV]]
-
[[Category: Slutsky, E]]
+
[[Category: Slutsky E]]
-
[[Category: Timofeev, V I]]
+
[[Category: Timofeev VI]]
-
[[Category: Aminopeptidase]]
+
-
[[Category: Dipeptidase]]
+
-
[[Category: Hydrolase]]
+

Current revision

Crystal structure of recombinant prolidase from Thermococcus sibiricus at P21221 spacegroup

PDB ID 4rgz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4rgz"
Personal tools