6o2f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:00, 31 July 2019) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 6o2f is ON HOLD until Paper Publication
+
==GCN4 with NPEG4 at position 18==
 +
<StructureSection load='6o2f' size='340' side='right'caption='[[6o2f]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[6o2f]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6O2F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6O2F FirstGlance]. <br>
 +
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6o2f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6o2f OCA], [http://pdbe.org/6o2f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6o2f RCSB], [http://www.ebi.ac.uk/pdbsum/6o2f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6o2f ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[[http://www.uniprot.org/uniprot/GCN4_YEAST GCN4_YEAST]] Is a transcription factor that is responsible for the activation of more than 30 genes required for amino acid or for purine biosynthesis in response to amino acid or purine starvation. Binds and recognize the DNA sequence: 5'-TGA[CG]TCA-3'.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Conjugation of polyethylene glycol (PEGylation) is a well-known strategy for extending the serum half-life of protein drugs and for increasing their resistance to proteolysis and aggregation. We previously showed that PEGylation can increase protein conformational stability; the extent of PEG-based stabilization depends on the PEGylation site, the structure of the PEG-protein linker, and the ability of PEG to release water molecules from the surrounding protein surface to bulk solvent. The strength of a non-covalent interaction within a protein depends highly on its microenvironment, with salt-bridge and hydrogen-bond strength increasing in non-polar vs. aqueous environments. Accordingly, we wondered whether partial desolvation by PEG of the surrounding protein surface might result in measurable increases in the strength of a salt bridge near a PEGylation site. Here we explore this possibility using triple mutant box analysis to assess the impact of PEGylation on the strength of nearby salt bridges at specific locations within three peptide model systems. The results indicate that PEG can increase nearby salt bridge strength, though this effect is not universal, and its precise structural prerequisites are not a simple function of secondary structural context, of orientation and distance between PEGylation site and salt bridge, or of salt-bridge residue identity. We obtained high-resolution x-ray diffraction data for a PEGylated peptide in which PEG enhances the strength of a nearby salt bridge. Comparing the electron density map of this PEGylated peptide vs. that of its non-PEGylated counterpart provide evidences for localized protein surface desolvation as a mechanism for the PEG-based salt-bridge stabilization.
-
Authors: Draper, S.R.E., Xiao, Q., Smith, M., Price, J.L.
+
Influence of PEGylation on the strength of protein surface salt bridges.,Xiao Q, Draper SRE, Smith MS, Brown N, Pugmire NAB, Ashton DS, Carter AJ, Lawrence EEK, Price JL ACS Chem Biol. 2019 Jun 12. doi: 10.1021/acschembio.9b00432. PMID:31188563<ref>PMID:31188563</ref>
-
Description: GCN4 with NPEG4 at position 18
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Price, J.L]]
+
<div class="pdbe-citations 6o2f" style="background-color:#fffaf0;"></div>
-
[[Category: Xiao, Q]]
+
 
-
[[Category: Draper, S.R.E]]
+
==See Also==
 +
*[[Gnc4 3D Structures|Gnc4 3D Structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Draper, S R.E]]
 +
[[Category: Price, J L]]
[[Category: Smith, M]]
[[Category: Smith, M]]
 +
[[Category: Xiao, Q]]
 +
[[Category: Gcn4]]
 +
[[Category: Peg]]
 +
[[Category: Pegylation]]
 +
[[Category: Transcription]]

Current revision

GCN4 with NPEG4 at position 18

PDB ID 6o2f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools