2cgy

From Proteopedia

(Difference between revisions)

Current revision

STRUCTURE OF HELIX POMATIA AGGLUTININ WITH FORSMANN ANTIGEN

Structural highlights

2cgy is a 1 chain structure with sequence from Helix pomatia. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 2.8Å
Ligands:	, , ,
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q2F1K8_HELPO

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

Helix pomatia agglutinin (HPA) is a lectin that has been used extensively in histopathology, since its binding to tissue sections from breast and colon cancers is correlated with the worst prognosis for the patients. The lectin recognizes alpha-d-N-acetylgalactosamine (alphaGalNAc) containing epitopes which are only present in cancer cell lines having a high likelihood to undergo metastasis, such as the HT29 cancer colon cell line. Several breast cancer cell lines have also been shown to be labeled, although IGROV1, an ovarian cancer cell line, is not. Inhibition studies, using GalNAc monosaccharides, are reported here, showing that the labeling is dependent upon the presence of carbohydrate epitopes. The crystal structures of the lectin complexed with two GalNAc containing epitopes associated with cancer, the Tn (alphaGalNAc-Ser) and Forssman (alphaGalNAc1-3GalNAc) antigens, show the lectin's specificity for GalNAc is due to a particular network of hydrogen bonds. A histidine residue makes hydrophobic contact with the aglycon, rationalizing the preference for GalNAc bearing an additional sugar or amino acid in the alpha position. These structures provide the molecular basis for the use of HPA in metastasis research.

Structural basis for recognition of breast and colon cancer epitopes Tn antigen and Forssman disaccharide by Helix pomatia lectin.,Lescar J, Sanchez JF, Audfray A, Coll JL, Breton C, Mitchell EP, Imberty A Glycobiology. 2007 Oct;17(10):1077-83. Epub 2007 Jul 25. PMID:17652409^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Lescar J, Sanchez JF, Audfray A, Coll JL, Breton C, Mitchell EP, Imberty A. Structural basis for recognition of breast and colon cancer epitopes Tn antigen and Forssman disaccharide by Helix pomatia lectin. Glycobiology. 2007 Oct;17(10):1077-83. Epub 2007 Jul 25. PMID:17652409 doi:10.1093/glycob/cwm077

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 See Also
6 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2cgy"

@@ Line 3: / Line 3: @@
 <StructureSection load='2cgy' size='340' side='right'caption='[[2cgy]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2cgy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Helix_pomatia Helix pomatia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CGY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CGY FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2cgy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helix_pomatia Helix pomatia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CGY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CGY FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FSM:FORSMANN+ANTIGEN'>FSM</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2ccv|2ccv]], [[2ce6|2ce6]], [[2cgz|2cgz]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene>, <scene name='pdbligand=PRD_900083:Forssman+antigen+fragment'>PRD_900083</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cgy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cgy OCA], [http://pdbe.org/2cgy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2cgy RCSB], [http://www.ebi.ac.uk/pdbsum/2cgy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2cgy ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cgy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cgy OCA], [https://pdbe.org/2cgy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cgy RCSB], [https://www.ebi.ac.uk/pdbsum/2cgy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cgy ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q2F1K8_HELPO Q2F1K8_HELPO]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 13: / Line 15: @@
   <jmolCheckbox>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cg/2cgy_consurf.spt"</scriptWhenChecked>
-    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
@@ Line 36: / Line 38: @@
 [[Category: Helix pomatia]]
 [[Category: Large Structures]]
-[[Category: Audfray, A]]
+[[Category: Audfray A]]
-[[Category: Breton, C]]
+[[Category: Breton C]]
-[[Category: Chazalet, V]]
+[[Category: Chazalet V]]
-[[Category: Gagnon, J]]
+[[Category: Gagnon J]]
-[[Category: Gautier, C]]
+[[Category: Gautier C]]
-[[Category: Imberty, A]]
+[[Category: Imberty A]]
-[[Category: Lescar, J]]
+[[Category: Lescar J]]
-[[Category: Mitchell, E P]]
+[[Category: Mitchell EP]]
-[[Category: Sanchez, J F]]
+[[Category: Sanchez J-F]]
-[[Category: Lectin]]
-[[Category: Snail]]
-[[Category: Sugar binding protein]]

2cgy

From Proteopedia

Current revision

STRUCTURE OF HELIX POMATIA AGGLUTININ WITH FORSMANN ANTIGEN

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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