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| <StructureSection load='4tq5' size='340' side='right'caption='[[4tq5]], [[Resolution|resolution]] 3.20Å' scene=''> | | <StructureSection load='4tq5' size='340' side='right'caption='[[4tq5]], [[Resolution|resolution]] 3.20Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4tq5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arcfu Arcfu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TQ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4TQ5 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4tq5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_DSM_4304 Archaeoglobus fulgidus DSM 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TQ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4TQ5 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2023Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4tq3|4tq3]], [[4tq4|4tq4]], [[4tq6|4tq6]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4tq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tq5 OCA], [https://pdbe.org/4tq5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4tq5 RCSB], [https://www.ebi.ac.uk/pdbsum/4tq5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4tq5 ProSAT]</span></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AF_1648 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 ARCFU])</td></tr>
| + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4tq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tq5 OCA], [http://pdbe.org/4tq5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4tq5 RCSB], [http://www.ebi.ac.uk/pdbsum/4tq5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4tq5 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/O28625_ARCFU O28625_ARCFU] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Arcfu]] | + | [[Category: Archaeoglobus fulgidus DSM 4304]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Bai, Y]] | + | [[Category: Bai Y]] |
- | [[Category: Huang, H]] | + | [[Category: Huang H]] |
- | [[Category: Levin, E J]] | + | [[Category: Levin EJ]] |
- | [[Category: NYCOMPS, New York Consortium on Membrane Protein Structure]]
| + | [[Category: Zhou M]] |
- | [[Category: Zhou, M]] | + | |
- | [[Category: Membrane protein]]
| + | |
- | [[Category: New york consortium on membrane protein structure]]
| + | |
- | [[Category: Nycomp]]
| + | |
- | [[Category: Prenyltransferase]]
| + | |
- | [[Category: Psi-biology]]
| + | |
- | [[Category: Structural genomic]]
| + | |
- | [[Category: Transferase]]
| + | |
| Structural highlights
Function
O28625_ARCFU
Publication Abstract from PubMed
Membrane-embedded prenyltransferases from the UbiA family catalyze the Mg2+-dependent transfer of a hydrophobic polyprenyl chain onto a variety of acceptor molecules and are involved in the synthesis of molecules that mediate electron transport, including Vitamin K and Coenzyme Q. In humans, missense mutations to the protein UbiA prenyltransferase domain-containing 1 (UBIAD1) are responsible for Schnyder crystalline corneal dystrophy, which is a genetic disease that causes blindness. Mechanistic understanding of this family of enzymes has been hampered by a lack of three-dimensional structures. We have solved structures of a UBIAD1 homolog from Archaeoglobus fulgidus, AfUbiA, in an unliganded form and bound to Mg2+ and two different isoprenyl diphosphates. Functional assays on MenA, a UbiA family member from E. coli, verified the importance of residues involved in Mg2+ and substrate binding. The structural and functional studies led us to propose a mechanism for the prenyl transfer reaction. Disease-causing mutations in UBIAD1 are clustered around the active site in AfUbiA, suggesting the mechanism of catalysis is conserved between the two homologs.
Structure of a Membrane-Embedded Prenyltransferase Homologous to UBIAD1.,Huang H, Levin EJ, Liu S, Bai Y, Lockless SW, Zhou M PLoS Biol. 2014 Jul 22;12(7):e1001911. doi: 10.1371/journal.pbio.1001911., eCollection 2014 Jul. PMID:25051182[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Huang H, Levin EJ, Liu S, Bai Y, Lockless SW, Zhou M. Structure of a Membrane-Embedded Prenyltransferase Homologous to UBIAD1. PLoS Biol. 2014 Jul 22;12(7):e1001911. doi: 10.1371/journal.pbio.1001911., eCollection 2014 Jul. PMID:25051182 doi:http://dx.doi.org/10.1371/journal.pbio.1001911
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