This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Laccase 3D structures

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:18, 13 June 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 4: Line 4:
{{#tree:id=OrganizedByTopic|openlevels=0|
{{#tree:id=OrganizedByTopic|openlevels=0|
-
*Laccase
+
*Laccase or multicopper oxidase
**[[1v10]] – Lac + Cu – ''Rigidoporus lignosus''<br />
**[[1v10]] – Lac + Cu – ''Rigidoporus lignosus''<br />
Line 13: Line 13:
**[[5ehf]] – Lac + Cu – ''Antrodiella faginea''<br />
**[[5ehf]] – Lac + Cu – ''Antrodiella faginea''<br />
**[[4a2d]], [[4a2e]], [[4a2f]], [[4a2g]], [[4a2h]], [[5a7e]] – Lac + Cu – ''Coriolopsis gallica''<br />
**[[4a2d]], [[4a2e]], [[4a2f]], [[4a2g]], [[4a2h]], [[5a7e]] – Lac + Cu – ''Coriolopsis gallica''<br />
-
**[[4jhu]], [[4jhv]] – Lac + Cu – ''Coriolopsis caperata''<br />
 
-
**[[3t6v]], [[3t6w]], [[3t6x]], [[3t6z]], [[3t71]] – Lac + Cu – ''Steccherinum ochraceum''<br />
 
**[[3sqr]], [[4x4k]] – BaLac + Cu – ''Botrytis aclada''<br />
**[[3sqr]], [[4x4k]] – BaLac + Cu – ''Botrytis aclada''<br />
**[[3v9e]] – BaLac (mutant) + Cu <br />
**[[3v9e]] – BaLac (mutant) + Cu <br />
**[[2xuw]], [[2xvb]] – TtLac – ''Thermus thermophilus''<br />
**[[2xuw]], [[2xvb]] – TtLac – ''Thermus thermophilus''<br />
-
**[[2yap]], [[5jx9]], [[5k0d]], [[5k15]], [[5k3k]], [[5k5k]], [[5k7a]], [[5k84]] – TtLac + Cu <br />
+
**[[2yap]], [[5jx9]], [[5k0d]], [[5k15]], [[5k3k]], [[5k5k]], [[5k7a]], [[5k84]], [[6q29]], [[6tyr]], [[6w2k]], [[6w9x]], [[6wcg]], [[6wch]], [[6wcl]], [[6wcm]], [[6wcn]], [[6wcp]] – TtLac + Cu <br />
**[[2xu9]] – TtLac (mutant) + Cu <br />
**[[2xu9]] – TtLac (mutant) + Cu <br />
**[[2yae]], [[5jrr]] – TtLac + Cu + O2 <br />
**[[2yae]], [[5jrr]] – TtLac + Cu + O2 <br />
**[[2yaf]], [[2yah]], [[2yam]], [[2yao]], [[2yaq]], [[2yar]], [[5afa]] – TtLac + Cu + OH <br />
**[[2yaf]], [[2yah]], [[2yam]], [[2yao]], [[2yaq]], [[2yar]], [[5afa]] – TtLac + Cu + OH <br />
 +
**[[4ai7]] – TtLac + Hg <br />
**[[2xyb]] – Lac + Cu + O2 – ''Pycnoporus cinnabarinus'' <br />
**[[2xyb]] – Lac + Cu + O2 – ''Pycnoporus cinnabarinus'' <br />
**[[3pps]] – Lac + Cu + O2 – ''Thielavia arenaria'' <br />
**[[3pps]] – Lac + Cu + O2 – ''Thielavia arenaria'' <br />
-
**[[3cg8]] – Lac + Cu + O – ''Streptomyces coelicolor'' <br />
+
**[[3cg8]] – ScLac + Cu + O – ''Streptomyces coelicolor'' <br />
**[[4f7k]] – Lac – uncultured bacterium<br />
**[[4f7k]] – Lac – uncultured bacterium<br />
**[[5nq7]], [[5nq8]], [[5nq9]] – Lac + Cu + O2 – ''Trametes sanguinea''<br />
**[[5nq7]], [[5nq8]], [[5nq9]] – Lac + Cu + O2 – ''Trametes sanguinea''<br />
-
**[[5z1x]], [[5z22]] – Lac + Cu + O2 – ''Cerrena''<br />
+
**[[3div]] – CmLac + Cu – ''Cerrena maxima''<br />
 +
**[[5z1x]], [[5z22]] – CmLac + Cu + O2 <br />
 +
**[[6h5y]] – Lac (mutant) + Cu – ''Aspergillus oryzae''<br />
 +
**[[4e9w]], [[4e9x]], [[4e9y]] – Lac + Cu + O2 – ''bacterium''<br />
*Laccase 1
*Laccase 1
Line 46: Line 48:
**[[1kya]] – Lac2 + Cu + arylamine – ''Trametes versicolor''<br />
**[[1kya]] – Lac2 + Cu + arylamine – ''Trametes versicolor''<br />
**[[5e9n]], [[6rgh]] – SmLac2 + Cu – ''Steccherinum murashkinskyi''<br />
**[[5e9n]], [[6rgh]] – SmLac2 + Cu – ''Steccherinum murashkinskyi''<br />
-
**[[5mej]], [[5mew]], [[5mhu]], [[5mhv]], [[5mhw]], [[5mhx]], [[5mhy]], [[5mhz]], [[5mi1]], [[5mi2]], [[5mia]], [[5mib]], [[5mic]], [[5mid]], [[5mie]], [[5mig]], [[6rgp]], [[6rhh]], [[6rhi]], [[6rho]], [[6rhp]], [[6rhr]], [[6rhu]], [[6rhx]], [[6ri0]], [[6ri2]], [[6ri4]], [[6ri6]], [[6ri8]], [[6rii]], [[6rik]], [[6ril]] – SmLac2 + Cu + O2<br />
+
**[[5mej]], [[5mew]], [[5mhu]], [[5mhv]], [[5mhw]], [[5mhx]], [[5mhy]], [[5mhz]], [[5mi1]], [[5mi2]], [[5mia]], [[5mib]], [[5mic]], [[5mid]], [[5mie]], [[5mig]], [[6rgp]], [[6rhh]], [[6rhi]], [[6rho]], [[6rhp]] – SmLac2 + Cu + O2<br />
 +
**[[6rhr]], [[6rhu]], [[6rhx]], [[6ri0]], [[6ri2]] – SmLac2 + Cu + Cl<br />
 +
**[[6ri4]], [[6ri6]], [[6ri8]], [[6rii]], [[6rik]], [[6ril]] – SmLac2 + Cu + F<br />
 +
 
 +
*Laccase 3
 +
 
 +
**[[6klg]] – maLac3 + Cu + O2 - maize <br />
 +
**[[6kli]] – maLac3 + Cu + O2 + sinapyl<br />
 +
**[[6klj]] – maLac3 + Cu + O2 + coniferyl<br />
*Two-domain laccase or small laccase
*Two-domain laccase or small laccase
**[[2zwn]] – Lac + Cu + Cu-O-Cu – metagenomes<br />
**[[2zwn]] – Lac + Cu + Cu-O-Cu – metagenomes<br />
-
**[[5lhl]] – SgLac + Cu + O2 – ''Streptomyces griseoflavus'' <br />
+
**[[5lhl]], [[6zij]] – SgLac + Cu + O2 – ''Streptomyces griseoflavus'' <br />
 +
**[[6rh9]], [[7pen]], [[7pes]], [[7pfr]], [[7ptm]], [[7pu0]], 7puh]] – SgLac (mutant) + Cu + O2<br />
**[[5mkm]], [[5o3k]], [[5o4i]], [[5o4q]], [[6fc7]], [[6fdj]] – SgLac (mutant) + Cu + O2 + O <br />
**[[5mkm]], [[5o3k]], [[5o4i]], [[5o4q]], [[6fc7]], [[6fdj]] – SgLac (mutant) + Cu + O2 + O <br />
-
**[[3tbb]], [[3tbc]], [[3tas]], [[3ta4]], [[3t9w]] – Lac + Cu + O2 – ''Streptomyces viridosporus'' <br />
+
**[[6rhq]] – SgLac (mutant) + Cu <br />
 +
**[[6s0o]] – SgLac + Cu + H2O2 <br />
 +
**[[6zip]] – SgLac (mutant) + Cu + H2O2 <br />
 +
**[[3tbb]], [[3tbc]], [[3tas]] – Lac + Cu + O2 – ''Streptomyces viridosporus'' <br />
 +
**[[4n8u]] – Lac + Cu – ''Streptomyces viridochromogenus'' <br />
 +
**[[4gyb]], [[4naj]], [[4nb7]] – Lac + Cu – ''Streptomyces lividans'' <br />
 +
**[[7bdn]] – ScLac + Cu <br />
 +
**[[7bfm]] – ScLac (mutant) + Cu <br />
 +
**[[4gxf]], [[4gy4]] – ScLac (mutant) + Cu + O<br />
 +
**[[7w6v]] – ScLac + Co <br />
 +
**[[3kw8]] – ScLac + Cu + Fe<br />
 +
 
 +
*Blue laccase
 +
 
 +
**[[3t6v]], [[3t6w]], [[3t6x]], [[3t6z]], [[3t71]] – Lac + Cu – ''Steccherinum ochraceum''<br />
 +
**[[2qt6]] – Lac + Cu – ''Lentinus tigrinus''<br />
 +
**[[2hrg]], [[2hrh]] – Lac + Cu – ''Funalia trogii''<br />
 +
**[[4jhu]], [[4jhv]] – Lac + Cu – ''Coriolopsis caperata''<br />
 +
**[[6im8]] – EcLac <br />
-
*CotA laccase
+
*CotA laccase or spore coat protein A
-
**[[2x87]], [[2x88]], [[1w6l]], [[1w6w]], [[1w8e]], [[1gsk]] – BsCotAl – ''Bacillus subtilis''<br />
+
**[[2x87]], [[2x88]], [[1w6l]], [[1w6w]], [[1w8e]], [[1gsk]], [[4q8k]], [[4yvu]], [[5zlj]] – BsCotAl + Cu – ''Bacillus subtilis''<br />
**[[2bhf]] - BsCotAl reduced<br />
**[[2bhf]] - BsCotAl reduced<br />
-
**[[2wsd]], [[4ako]], [[4akp]], [[4akq]] – BsCotAl (mutant)<br />
+
**[[3zdw]] – BsLac + Cu + O2 <br />
-
**[[1of0]], [[3zdw]] - BsCotAl + ABTS<br />
+
**[[4q8b]] – BsLac + Cu + O2 + sinaptic acid<br />
-
**[[4a66]], [[4a67]], [[4a68]] - BsSCP (mutant) + Cu + peroxide<br />
+
**[[2wsd]], [[4ako]], [[4akp]], [[4akq]], [[5zlk]], [[5zll]], [[5zlm]] – BsCotAl (mutant) + Cu<br />
 +
**[[4yvn]] - BsCotAl + ABTS + Cu<br />
 +
**[[1of0]] - BsCotAl + ABTS + Cu + CuO + O2<br />
 +
**[[4a66]], [[4a67]], [[4a68]], [[4ako]], [[4akp]], [[4akq]] - BsSCP (mutant) + Cu + peroxide<br />
*CotS laccase
*CotS laccase
Line 67: Line 99:
**[[1nps]] – CotSl N terminal – ''Myxococcus xanthus''
**[[1nps]] – CotSl N terminal – ''Myxococcus xanthus''
-
*Laccase
+
*Multicopper oxidase
-
**[[3div]] - Lac - ''Cerrena maxima''<br />
+
**[[5lww]] – Lac + Cu – ''Aspergillus niger''<br />
 +
**[[6vow]], [[6vox]] – Lac + Cu + Cu2O – ''Pseudomonas thermotolerans''<br />
 +
**[[5g3c]], [[5g3b]], [[5g3d]], [[5g3e]], [[5g3f]], [[5g3g]], [[5g3h]] – TtLac + Cu <br />
 +
**[[3gdc]] – Lac + Cu – ''Arthrobacter''<br />
 +
**[[3aw5]] – Lac + Cu – ''Pyrobaculum aerophilum''<br />
 +
**[[6xiz]] – Lac + Cu – ''Pediococcus acidilactici''<br />
 +
**[[6xj0]] – Lac + Cu + CuO – ''Pediococcus pentosaceus''<br />
 +
**[[3ta4]], [[3t9w]] – Lac + Cu + H2O2 – ''Amycolatopsis''<br />
 +
**[[4m3h]], [[4wtq]] – SsLac + Cu + O – ''Streptomyces sviceus'' <br />
 +
**[[4uah]], [[4uan]], [[4w1t]], [[6y4a]], [[6yzd]], [[6yzy]] – SsLac (mutant) + Cu <br />
 +
**[[6yo5]], [[6yzf]] – SsLac (mutant) + peptide + Cu <br />
*CueO laccase See [[Blue copper oxidase CueO]]
*CueO laccase See [[Blue copper oxidase CueO]]

Current revision

3D structures of laccase

Updated on 13-June-2023

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

Retrieved from "http://52.214.119.220/wiki/index.php/Laccase_3D_structures"
Personal tools