6nz8

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'''Unreleased structure'''
 
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The entry 6nz8 is ON HOLD until Paper Publication
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==Structure of carbamylated apo OXA-231 carbapenemase==
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<StructureSection load='6nz8' size='340' side='right'caption='[[6nz8]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6nz8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baumannii Acinetobacter baumannii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NZ8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NZ8 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6nz8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nz8 OCA], [https://pdbe.org/6nz8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6nz8 RCSB], [https://www.ebi.ac.uk/pdbsum/6nz8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6nz8 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/H9U2W6_ACIBA H9U2W6_ACIBA]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The class D beta-lactamase OXA-143 has been described as an efficient penicillinase, oxacillinase, and carbapenemase. The D224A variant, known as OXA-231, was described in 2012 as exhibiting less activity toward imipenem and increased oxacillinase activity. Additionally, the P227S mutation was reported as a case of convergent evolution for homologous enzymes. To investigate the impact of both mutations (D224A and P227S), we describe in this paper a deep investigation of the enzymatic activities of these three homologues. OXA-143(P227S) presented enhanced catalytic activity against ampicillin, oxacillins, aztreonam, and carbapenems. In addition, OXA-143(P227S) was the only member capable of hydrolyzing ceftazidime. These enhanced activities were due to a combination of a higher affinity (lower Km) and a higher turnover number (higher kcat). We also determined the crystal structure of apo OXA-231. As expected, the structure of this variant is very similar to the published OXA-143 structure, except for the two M223 conformations and the absence of electron density for three solvent-exposed loop segments. Molecular dynamics calculations showed that both mutants experience higher flexibility compared to that of the wild-type form. Therefore, our results illustrate that D224A and P227S act as deleterious and positive mutations, respectively, within the evolutionary path of the OXA-143 subfamily toward a more efficient carbapenemase.
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Authors: Favaro, D.C., Llontop, E.E., Vasconcelos, F.N., Antunes, V.U., Farah, S.C., Lincopan, N.
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Importance of the beta5-beta6 Loop for the Structure, Catalytic Efficiency, and Stability of Carbapenem-Hydrolyzing Class D beta-Lactamase Subfamily OXA-143.,Antunes VU, Llontop EE, Vasconcelos FNDC, Lopez de Los Santos Y, Oliveira RJ, Lincopan N, Farah CS, Doucet N, Mittermaier A, Favaro DC Biochemistry. 2019 Aug 27;58(34):3604-3616. doi: 10.1021/acs.biochem.9b00365., Epub 2019 Aug 15. PMID:31355630<ref>PMID:31355630</ref>
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Description: Structure of carbamylated apo OXA-231 carbapenemase
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Favaro, D.C]]
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<div class="pdbe-citations 6nz8" style="background-color:#fffaf0;"></div>
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[[Category: Lincopan, N]]
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[[Category: Antunes, V.U]]
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==See Also==
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[[Category: Vasconcelos, F.N]]
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*[[Beta-lactamase 3D structures|Beta-lactamase 3D structures]]
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[[Category: Llontop, E.E]]
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== References ==
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[[Category: Farah, S.C]]
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Acinetobacter baumannii]]
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[[Category: Large Structures]]
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[[Category: Antunes VU]]
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[[Category: Farah SC]]
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[[Category: Favaro DC]]
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[[Category: Lincopan N]]
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[[Category: Llontop EE]]
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[[Category: Vasconcelos FN]]

Current revision

Structure of carbamylated apo OXA-231 carbapenemase

PDB ID 6nz8

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