This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6mtb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (02:55, 11 April 2020) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)==
==Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)==
-
<StructureSection load='6mtb' size='340' side='right'caption='[[6mtb]], [[Resolution|resolution]] 3.60&Aring;' scene=''>
+
<SX load='6mtb' size='340' side='right' viewer='molstar' caption='[[6mtb]], [[Resolution|resolution]] 3.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6mtb]] is a 83 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MTB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6MTB FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6mtb]] is a 83 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MTB OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6MTB FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1MA:6-HYDRO-1-METHYLADENOSINE-5-MONOPHOSPHATE'>1MA</scene>, <scene name='pdbligand=2MG:2N-METHYLGUANOSINE-5-MONOPHOSPHATE'>2MG</scene>, <scene name='pdbligand=4AC:N(4)-ACETYLCYTIDINE-5-MONOPHOSPHATE'>4AC</scene>, <scene name='pdbligand=5MC:5-METHYLCYTIDINE-5-MONOPHOSPHATE'>5MC</scene>, <scene name='pdbligand=5MU:5-METHYLURIDINE+5-MONOPHOSPHATE'>5MU</scene>, <scene name='pdbligand=6MZ:N6-METHYLADENOSINE-5-MONOPHOSPHATE'>6MZ</scene>, <scene name='pdbligand=7MG:7N-METHYL-8-HYDROGUANOSINE-5-MONOPHOSPHATE'>7MG</scene>, <scene name='pdbligand=A2M:2-O-METHYLADENOSINE+5-(DIHYDROGEN+PHOSPHATE)'>A2M</scene>, <scene name='pdbligand=B8H:'>B8H</scene>, <scene name='pdbligand=B8K:'>B8K</scene>, <scene name='pdbligand=B8N:'>B8N</scene>, <scene name='pdbligand=B8Q:'>B8Q</scene>, <scene name='pdbligand=B8T:'>B8T</scene>, <scene name='pdbligand=B8W:'>B8W</scene>, <scene name='pdbligand=B9B:'>B9B</scene>, <scene name='pdbligand=B9H:'>B9H</scene>, <scene name='pdbligand=BGH:'>BGH</scene>, <scene name='pdbligand=E3C:'>E3C</scene>, <scene name='pdbligand=E6G:'>E6G</scene>, <scene name='pdbligand=E7G:'>E7G</scene>, <scene name='pdbligand=I4U:'>I4U</scene>, <scene name='pdbligand=M7A:'>M7A</scene>, <scene name='pdbligand=MA6:6N-DIMETHYLADENOSINE-5-MONOPHOSHATE'>MA6</scene>, <scene name='pdbligand=MHG:'>MHG</scene>, <scene name='pdbligand=MLZ:N-METHYL-LYSINE'>MLZ</scene>, <scene name='pdbligand=OMC:O2-METHYLYCYTIDINE-5-MONOPHOSPHATE'>OMC</scene>, <scene name='pdbligand=OMG:O2-METHYLGUANOSINE-5-MONOPHOSPHATE'>OMG</scene>, <scene name='pdbligand=OMU:O2-METHYLURIDINE+5-MONOPHOSPHATE'>OMU</scene>, <scene name='pdbligand=P4U:'>P4U</scene>, <scene name='pdbligand=P7G:'>P7G</scene>, <scene name='pdbligand=PSU:PSEUDOURIDINE-5-MONOPHOSPHATE'>PSU</scene>, <scene name='pdbligand=UR3:3-METHYLURIDINE-5-MONOPHOSHATE'>UR3</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1MA:6-HYDRO-1-METHYLADENOSINE-5-MONOPHOSPHATE'>1MA</scene>, <scene name='pdbligand=2MG:2N-METHYLGUANOSINE-5-MONOPHOSPHATE'>2MG</scene>, <scene name='pdbligand=4AC:N(4)-ACETYLCYTIDINE-5-MONOPHOSPHATE'>4AC</scene>, <scene name='pdbligand=5MC:5-METHYLCYTIDINE-5-MONOPHOSPHATE'>5MC</scene>, <scene name='pdbligand=5MU:5-METHYLURIDINE+5-MONOPHOSPHATE'>5MU</scene>, <scene name='pdbligand=6MZ:N6-METHYLADENOSINE-5-MONOPHOSPHATE'>6MZ</scene>, <scene name='pdbligand=7MG:7N-METHYL-8-HYDROGUANOSINE-5-MONOPHOSPHATE'>7MG</scene>, <scene name='pdbligand=A2M:2-O-METHYLADENOSINE+5-(DIHYDROGEN+PHOSPHATE)'>A2M</scene>, <scene name='pdbligand=B8H:'>B8H</scene>, <scene name='pdbligand=B8K:'>B8K</scene>, <scene name='pdbligand=B8N:'>B8N</scene>, <scene name='pdbligand=B8Q:'>B8Q</scene>, <scene name='pdbligand=B8T:'>B8T</scene>, <scene name='pdbligand=B8W:'>B8W</scene>, <scene name='pdbligand=B9B:'>B9B</scene>, <scene name='pdbligand=B9H:'>B9H</scene>, <scene name='pdbligand=BGH:'>BGH</scene>, <scene name='pdbligand=E3C:'>E3C</scene>, <scene name='pdbligand=E6G:'>E6G</scene>, <scene name='pdbligand=E7G:'>E7G</scene>, <scene name='pdbligand=I4U:'>I4U</scene>, <scene name='pdbligand=M7A:'>M7A</scene>, <scene name='pdbligand=MA6:6N-DIMETHYLADENOSINE-5-MONOPHOSHATE'>MA6</scene>, <scene name='pdbligand=MHG:'>MHG</scene>, <scene name='pdbligand=MLZ:N-METHYL-LYSINE'>MLZ</scene>, <scene name='pdbligand=OMC:O2-METHYLYCYTIDINE-5-MONOPHOSPHATE'>OMC</scene>, <scene name='pdbligand=OMG:O2-METHYLGUANOSINE-5-MONOPHOSPHATE'>OMG</scene>, <scene name='pdbligand=OMU:O2-METHYLURIDINE+5-MONOPHOSPHATE'>OMU</scene>, <scene name='pdbligand=P4U:'>P4U</scene>, <scene name='pdbligand=P7G:'>P7G</scene>, <scene name='pdbligand=PSU:PSEUDOURIDINE-5-MONOPHOSPHATE'>PSU</scene>, <scene name='pdbligand=UR3:3-METHYLURIDINE-5-MONOPHOSHATE'>UR3</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6mtb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mtb OCA], [http://pdbe.org/6mtb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6mtb RCSB], [http://www.ebi.ac.uk/pdbsum/6mtb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6mtb ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6mtb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mtb OCA], [http://pdbe.org/6mtb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6mtb RCSB], [http://www.ebi.ac.uk/pdbsum/6mtb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6mtb ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 6mtb" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6mtb" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Ribosome 3D structures|Ribosome 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
-
</StructureSection>
+
</SX>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Oryctolagus cuniculus]]
[[Category: Oryctolagus cuniculus]]

Current revision

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

6mtb, resolution 3.60Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools