4wv8

From Proteopedia

(Difference between revisions)

Current revision

Crystal structure of a recombinant Vatairea macrocarpa seed lectin complexed with lactose

Structural highlights

4wv8 is a 4 chain structure with sequence from Vatairea macrocarpa. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 1.83Å
Ligands:	, , , ,
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

LECS_VATMA Lectin that binds galactose.

Publication Abstract from PubMed

Legume lectins are the most thoroughly studied group of lectins and have been widely linked to many pathological processes. Their use as immunohistochemistry markers for cell profiling and cancer diagnosis have made these molecules important tools for immunological studies and have stimulated the prospection and characterization of new lectins. The crystal structures of a recombinant seed lectin from Vatairea macrocarpa (rVML) and its complexes with GalNAcalpha1-O-Ser, GalNAc and alpha-lactose, have been determined at 1.90, 1.97, 2.70 and 1.83A resolution, respectively. Small angle X-ray scattering and calorimetry assays have confirmed the same pH stable oligomerization pattern and binding profiles proposed for its wild-type counterpart. In silico analyzes have explored the potential of this recombinant lectin as new tool for cancer research through a comparative profile with other legume lectins widely used for cancer diagnosis and prognosis. The results suggest the recognition of specific epitopes exhibited on different cancer cells as a process that relies on the disposition of hydrophobic clusters and charged regions around the lectin carbohydrate-binding site, favouring the anchorage of different groups in the antigen boundaries, highlighting the different potential of each analyzed lectin. In conclusion, the experimental results and comparative analysis show that rVML is as a promising tool for cancer research, able to bind with high affinity specific tumor-associated antigens, highly stable and easily produced.

Structural characterization of a Vatairea macrocarpa lectin in complex with a tumor-associated antigen: A new tool for cancer research.,Sousa BL, Silva-Filho JC, Kumar P, Graewert MA, Pereira RI, Cunha RM, Nascimento KS, Bezerra GA, Delatorre P, Djinovic-Carugo K, Nagano CS, Gruber K, Cavada BS Int J Biochem Cell Biol. 2016 Jan 2;72:27-39. doi: 10.1016/j.biocel.2015.12.016. PMID:26751394^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Sousa BL, Silva-Filho JC, Kumar P, Graewert MA, Pereira RI, Cunha RM, Nascimento KS, Bezerra GA, Delatorre P, Djinovic-Carugo K, Nagano CS, Gruber K, Cavada BS. Structural characterization of a Vatairea macrocarpa lectin in complex with a tumor-associated antigen: A new tool for cancer research. Int J Biochem Cell Biol. 2016 Jan 2;72:27-39. doi: 10.1016/j.biocel.2015.12.016. PMID:26751394 doi:http://dx.doi.org/10.1016/j.biocel.2015.12.016

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4wv8"

@@ Line 3: / Line 3: @@
 <StructureSection load='4wv8' size='340' side='right'caption='[[4wv8]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4wv8]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Vatma Vatma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WV8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4WV8 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4wv8]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Vatairea_macrocarpa Vatairea macrocarpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WV8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4WV8 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=LBT:ALPHA-LACTOSE'>LBT</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4wv8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wv8 OCA], [http://pdbe.org/4wv8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4wv8 RCSB], [http://www.ebi.ac.uk/pdbsum/4wv8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4wv8 ProSAT]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PRD_900008:alpha-lactose'>PRD_900008</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4wv8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wv8 OCA], [https://pdbe.org/4wv8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4wv8 RCSB], [https://www.ebi.ac.uk/pdbsum/4wv8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4wv8 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/LECS_VATMA LECS_VATMA]] Lectin that binds galactose.
+[https://www.uniprot.org/uniprot/LECS_VATMA LECS_VATMA] Lectin that binds galactose.
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 23: / Line 24: @@
 </StructureSection>
 [[Category: Large Structures]]
-[[Category: Vatma]]
+[[Category: Vatairea macrocarpa]]
-[[Category: Bezerra, G A]]
+[[Category: Bezerra GA]]
-[[Category: Cavada, B S]]
+[[Category: Cavada BS]]
-[[Category: Cunha, R M.S]]
+[[Category: Cunha RMS]]
-[[Category: Delatorre, P]]
+[[Category: Delatorre P]]
-[[Category: Gruber, K]]
+[[Category: Gruber K]]
-[[Category: Kumar, P]]
+[[Category: Kumar P]]
-[[Category: Lyskowski, A]]
+[[Category: Lyskowski A]]
-[[Category: Nagano, C S]]
+[[Category: Nagano CS]]
-[[Category: Rocha, B A.M]]
+[[Category: Rocha BAM]]
-[[Category: Silva-Filho, J C]]
+[[Category: Silva-Filho JC]]
-[[Category: Sousa, B L]]
+[[Category: Sousa BL]]
-[[Category: Dalbergieae]]
-[[Category: Lectin]]
-[[Category: Legume]]
-[[Category: Recombinant]]
-[[Category: Sugar binding protein]]

4wv8

From Proteopedia

Current revision

Crystal structure of a recombinant Vatairea macrocarpa seed lectin complexed with lactose

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox