6p0l

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'''Unreleased structure'''
 
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The entry 6p0l is ON HOLD
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==Crystal structure of GDP-bound human RalA in a covalent complex with aryl sulfonyl fluoride compounds.==
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<StructureSection load='6p0l' size='340' side='right'caption='[[6p0l]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6p0l]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6P0L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6P0L FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=NLJ:4-[(2-methoxypyridin-3-yl)sulfamoyl]benzene-1-sulfonic+acid'>NLJ</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6p0l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6p0l OCA], [https://pdbe.org/6p0l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6p0l RCSB], [https://www.ebi.ac.uk/pdbsum/6p0l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6p0l ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/RALA_HUMAN RALA_HUMAN] Multifunctional GTPase involved in a variety of cellular processes including gene expression, cell migration, cell proliferation, oncogenic transformation and membrane trafficking. Accomplishes its multiple functions by interacting with distinct downstream effectors. Acts as a GTP sensor for GTP-dependent exocytosis of dense core vesicles. Plays a role in the early stages of cytokinesis and is required to tether the exocyst to the cytokinetic furrow. The RALA-exocyst complex regulates integrin-dependent membrane raft exocytosis and growth signaling. Key regulator of LPAR1 signaling and competes with ADRBK1 for binding to LPAR1 thus affecting the signaling properties of the receptor. Required for anchorage-independent proliferation of transformed cells.<ref>PMID:18756269</ref> <ref>PMID:19306925</ref> <ref>PMID:20005108</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Ral (Ras-like) GTPases are directly activated by oncogenic Ras GTPases. Mutant K-Ras (G12C) has enabled the development of covalent K-Ras inhibitors currently in clinical trials. However, Ral, and the overwhelming majority of mutant oncogenic K-Ras, are devoid of a druggable pocket and lack an accessible cysteine for the development of a covalent inhibitor. Here, we report that covalent bond formation by an aryl sulfonyl fluoride electrophile at a tyrosine residue (Tyr-82) inhibits guanine exchange factor Rgl2-mediated nucleotide exchange of Ral GTPase. A high-resolution 1.18-A X-ray cocrystal structure shows that the compound binds to a well-defined binding site in RalA as a result of a switch II loop conformational change. The structure, along with additional high-resolution crystal structures of several analogs in complex with RalA, confirm the importance of key hydrogen bond anchors between compound sulfone oxygen atoms and Ral backbone nitrogen atoms. Our discovery of a pocket with features found on known druggable sites and covalent modification of a bystander tyrosine residue present in Ral and Ras GTPases provide a strategy that could lead to therapeutic agent targeting oncogenic Ras mutants that are devoid of a cysteine nucleophile.
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Authors: Bum-Erdene, K., Gonzalez-Gutierrez, G., Liu, D., Ghozayel, M.K., Xu, D., Meroueh, S.O.
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Small-molecule covalent bond formation at tyrosine creates a binding site and inhibits activation of Ral GTPases.,Bum-Erdene K, Liu D, Gonzalez-Gutierrez G, Ghozayel MK, Xu D, Meroueh SO Proc Natl Acad Sci U S A. 2020 Mar 16. pii: 1913654117. doi:, 10.1073/pnas.1913654117. PMID:32179690<ref>PMID:32179690</ref>
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Description: Crystal structure of GDP-bound human RalA in a covalent complex with aryl sulfonyl fluoride compounds.
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Liu, D]]
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<div class="pdbe-citations 6p0l" style="background-color:#fffaf0;"></div>
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[[Category: Meroueh, S.O]]
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== References ==
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[[Category: Xu, D]]
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<references/>
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[[Category: Ghozayel, M.K]]
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__TOC__
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[[Category: Bum-Erdene, K]]
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</StructureSection>
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[[Category: Gonzalez-Gutierrez, G]]
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Bum-Erdene K]]
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[[Category: Ghozayel MK]]
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[[Category: Gonzalez-Gutierrez G]]
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[[Category: Liu D]]
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[[Category: Meroueh SO]]
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[[Category: Xu D]]

Current revision

Crystal structure of GDP-bound human RalA in a covalent complex with aryl sulfonyl fluoride compounds.

PDB ID 6p0l

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