D-alanine-D-alanine ligase 3D structures
From Proteopedia
(Difference between revisions)
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**[[2fb9]] – DDL – ''Thermus caldophilus'' <br /> | **[[2fb9]] – DDL – ''Thermus caldophilus'' <br /> | ||
| - | **[[2yzg]] – TtDDL – ''Thermus thermophilus'' <br /> | + | **[[2yzg]], [[6u1c]] – TtDDL – ''Thermus thermophilus'' <br /> |
**[[2i80]], [[2i87]] – SaDDL – ''Staphylococcus aureus'' <br /> | **[[2i80]], [[2i87]] – SaDDL – ''Staphylococcus aureus'' <br /> | ||
**[[2pvp]] – DDL – ''Helicobacter pylori'' <br /> | **[[2pvp]] – DDL – ''Helicobacter pylori'' <br /> | ||
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**[[5d8d]], [[5dmx]] – DDL – ''Acinetobacter baumannii'' <br /> | **[[5d8d]], [[5dmx]] – DDL – ''Acinetobacter baumannii'' <br /> | ||
**[[6dgi]] – DDL – ''Vibrio cholerae'' <br /> | **[[6dgi]] – DDL – ''Vibrio cholerae'' <br /> | ||
| + | **[[8evv]] – PaDDL A – ''Pseudomonas aeruginosa''<br /> | ||
*D-alanine-D-alanine ligase binary complex | *D-alanine-D-alanine ligase binary complex | ||
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**[[2i8c]] – SaDDL + ADP <br /> | **[[2i8c]] – SaDDL + ADP <br /> | ||
**[[3n8d]] – SaDDL (mutant) + ANP <br /> | **[[3n8d]] – SaDDL (mutant) + ANP <br /> | ||
| - | **[[2zdg]] – TtDDL + ADP <br /> | + | **[[2zdg]], [[6u1h]] – TtDDL + ADP <br /> |
**[[2yzm]] – TtDDL + D-alanine <br /> | **[[2yzm]] – TtDDL + D-alanine <br /> | ||
**[[2yzn]] – TtDDL + AMPPNP <br /> | **[[2yzn]] – TtDDL + AMPPNP <br /> | ||
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**[[3rfc]] – XoDDL (mutant) + ADP <br /> | **[[3rfc]] – XoDDL (mutant) + ADP <br /> | ||
**[[3r5f]] – XoDDL (mutant) + ATP <br /> | **[[3r5f]] – XoDDL (mutant) + ATP <br /> | ||
| + | **[[6ll9]] – DDL + D-alanine – ''Aeromonas hydrophila''<br /> | ||
| + | **[[7u56]] – DDL + AMP – ''Klebsiella pneumoniae''<br /> | ||
*D-alanine-D-alanine ligase ternary complex | *D-alanine-D-alanine ligase ternary complex | ||
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**[[2zdh]] – TtDDL + D-alanine + ADP<br /> | **[[2zdh]] – TtDDL + D-alanine + ADP<br /> | ||
**[[2zdq]] – TtDDL + D-alanine + ATP<br /> | **[[2zdq]] – TtDDL + D-alanine + ATP<br /> | ||
| + | **[[6u1d]], [[6u1e]], [[6u1f]], [[6u1g]] – TtDDL + D-alanine-D-alanine + ATP<br /> | ||
| + | **[[6u1j]], [[6u1k]] – TtDDL + D-alanine-D-alanine + ADP<br /> | ||
| + | **[[6u1i]] – TtDDL + P-cyclo-Ser + ADP<br /> | ||
**[[5nri]] – BpDDL + D-alanine-D-alanine + AMP<br /> | **[[5nri]] – BpDDL + D-alanine-D-alanine + AMP<br /> | ||
**[[5c1p]] – YpDDL + D-alanine-D-alanine + ADP<br /> | **[[5c1p]] – YpDDL + D-alanine-D-alanine + ADP<br /> | ||
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**[[4c5a]] – EcDDL + ADP + cycloserine phosphate + peptide<br /> | **[[4c5a]] – EcDDL + ADP + cycloserine phosphate + peptide<br /> | ||
**[[4c5b]], [[4c5c]] – EcDDL + D-alanine-D-alanine + ADP<br /> | **[[4c5b]], [[4c5c]] – EcDDL + D-alanine-D-alanine + ADP<br /> | ||
| + | **[[7u9k]] – SaDDL + D-alanine-D-alanine + ATP<br /> | ||
| + | **[[8evx]] – PaDDL A + cycloSer + ATP <br /> | ||
| + | **[[8evw]] – PaDDL A + D-alanine-D-alanine + ATP <br /> | ||
| + | **[[8evy]] – PaDDL B + D-alanine-D-alanine + ATP <br /> | ||
| + | **[[8evz]] – PaDDL B + cycloSer + ATP <br /> | ||
| + | |||
}} | }} | ||
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
Current revision
3D structures of D-alanine-D-alanine ligase
Updated on 25-March-2025
