This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Avidin 3D structures

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:20, 23 October 2022) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 5: Line 5:
{{#tree:id=OrganizedByTopic|openlevels=0|
{{#tree:id=OrganizedByTopic|openlevels=0|
-
*Avidin
+
*Avidin 21-152
-
**[[3fdc]], [[2jgs]], [[2c4i]], [[1vyo]], [[1rav]], [[1ave]] – cAv – chicken<br />
+
**[[3fdc]], [[2jgs]], [[2c4i]], [[1vyo]], [[1rav]], [[1ave]], [[7p4z]] – cAv – chicken<br />
**[[2a5b]], [[2a5c]], [[2a8g]] – cAv+deoxyribose<br />
**[[2a5b]], [[2a5c]], [[2a8g]] – cAv+deoxyribose<br />
**[[1nqn]], [[2cam]], [[4bcs]], [[4u46]], [[5lur]] – cAv (mutant)<br />
**[[1nqn]], [[2cam]], [[4bcs]], [[4u46]], [[5lur]] – cAv (mutant)<br />
-
**[[1ldo]], [[1ldq]], [[1lel]], [[1ij8]], [[1avd]], [[2avi]], [[3vgw]], [[3vhh]], [[3vhi]], [[3vhm]], [[4i60]], [[4jhq]], [[5hlm]], [[5iru]], [[5irw]], [[5myq]] – cAV + biotin derivative<br />
+
**[[1ldo]], [[1ldq]], [[1lel]], [[1ij8]], [[1avd]], [[2avi]], [[3vgw]], [[3vhh]], [[3vhi]], [[3vhm]], [[4i60]], [[4jhq]], [[5hlm]], [[5iru]], [[5irw]], [[5myq]], [[6xnd]] – cAV + biotin derivative<br />
**[[5chk]] – cAV+ HABA<br />
**[[5chk]] – cAV+ HABA<br />
**[[3szh]], [[3szi]] – SdAV – ''Shewanella denitrificans''<br />
**[[3szh]], [[3szi]] – SdAV – ''Shewanella denitrificans''<br />
Line 17: Line 17:
**[[3t2w]] – SdAV (mutant) + biotin
**[[3t2w]] – SdAV (mutant) + biotin
-
*Streptavidin full length
+
*Streptavidin full length 1-183
-
**[[2bc3]], [[5vcq]], [[5n8t]] – StrAv - ''Streptomyces avidinii''<br />
+
**[[2bc3]], [[5vcq]], [[5n8t]], [[7ek8]], [[7ek9]] – StrAv - ''Streptomyces avidinii''<br />
-
**[[2qcb]] – StrAv + biotin derivative <br />
+
**[[2qcb]], [[7efc]], [[7efd]] – StrAv + biotin derivative <br />
**[[4dne]] - StrAv (mutant)+biotin derivative<br />
**[[4dne]] - StrAv (mutant)+biotin derivative<br />
**[[5n99]], [[5n8w]], [[5n8j]], [[5n8e]], [[5n8b]], [[5n89]], [[5n7x]] - StrAv + peptide<br />
**[[5n99]], [[5n8w]], [[5n8j]], [[5n8e]], [[5n8b]], [[5n89]], [[5n7x]] - StrAv + peptide<br />
 +
**[[7cq0]] – ScAv - ''Streptomyces cinamonensis''<br />
 +
**[[7cpz]] – StrAv+ biotin <br />
*Streptavidin core residues 38-183
*Streptavidin core residues 38-183
-
**[[1swa]], [[1swb]], [[1swc]], [[1ry1]], [[2iza]], [[2izb]], [[2izc]], [[2izd]], [[2ize]], [[2rta]], [[2rtb]], [[2rtc]], [[3ry1]], [[4gd9]]. [[4gda]], [[4gjs]], [[4jnj]] - StrAv <br />
+
**[[1swa]], [[1swb]], [[1swc]], [[1ry1]], [[2iza]], [[2izb]], [[2izc]], [[2izd]], [[2ize]], [[2rta]], [[2rtb]], [[2rtc]], [[3ry1]], [[4gd9]]. [[4gda]], [[4gjs]], [[4jnj]], [[6lng]], [[6ud1]], [[7knl]] - StrAv <br />
 +
**[[6j6k]], [[7dy0]] - StrAv – Cryo EM <br />
**[[1swh]], [[1swj]], [[1swl]], [[1swo]], [[1swq]], [[1sws]], [[2y3e]], [[3t6l]], [[4bx6]], [[4bx5]], [[3mm0]], [[3pk2]], [[3rds]], [[3rdx]], [[3re5]], [[3re6]], [[4gjv]],[[1rxj]], [[1rxk]], [[1nqm]], [[1kff]], [[1kl4]], [[1luq]], [[1mm9]], [[1moy]], [[1n4j]] [[1n7y]], [[1n9y]] - StrAv (mutant) <br />
**[[1swh]], [[1swj]], [[1swl]], [[1swo]], [[1swq]], [[1sws]], [[2y3e]], [[3t6l]], [[4bx6]], [[4bx5]], [[3mm0]], [[3pk2]], [[3rds]], [[3rdx]], [[3re5]], [[3re6]], [[4gjv]],[[1rxj]], [[1rxk]], [[1nqm]], [[1kff]], [[1kl4]], [[1luq]], [[1mm9]], [[1moy]], [[1n4j]] [[1n7y]], [[1n9y]] - StrAv (mutant) <br />
-
**[[1rst]], [[1rsu]], [[4jo6]] - StrAv + strep-tag II peptide<br />
+
**[[1rst]], [[1rsu]], [[4jo6]], [[6sok]], [[6sos]], [[6tip]] - StrAv + strep-tag II peptide<br />
**[[1nbx]], [[1swf]], [[1swu]], [[1kl3]], [[1kl5]] - StrAv (mutant) + strep-tag II peptide<br />
**[[1nbx]], [[1swf]], [[1swu]], [[1kl3]], [[1kl5]] - StrAv (mutant) + strep-tag II peptide<br />
-
**[[1stp]], [[2izf]], [[2izg]], [[2izh]], [[2izi]], [[2izj]], [[2rtd]], [[2rte]], [[2rtf]], [[2rtg]], [[4gda]], [[1mk5]], [[1swd]], [[1swe]], [[2f01]], [[2gh7]], [[3ry2]] - StrAv +biotin<br />
+
**[[1stp]], [[2izf]], [[2izg]], [[2izh]], [[2izi]], [[2izj]], [[2rtd]], [[2rte]], [[2rtf]], [[2rtg]], [[4gda]], [[1mk5]], [[1swd]], [[1swe]], [[2f01]], [[2gh7]], [[3ry2]], [[6m9b]], [[6uc3]], [[6udc]] - StrAv +biotin<br />
-
**[[1df8]], [[1mep]], [[1n43]], [[1n9m]], [[1ndj]], [[1swg]], [[3rdm]], [[3rdo]], [[4ekv]], [[6aul]], [[4yvb]], [[1swk]], [[1swn]], [[1swp]], [[1swr]], [[1swt]], [[3mg5]], [[2y3f]], [[3t6f]], [[3wyq]] - StrAv (mutant) +biotin<br />
+
**[[6j6j]] - StrAv + biotin – Cryo EM<br />
-
**[[1lcv]], [[1lcw]], [[1lcz]], [[1i9h]], [[2izl]], [[2rtl]], [[2rtm]], [[2rtn]], [[2rto]], [[2rtp]], [[2rtq]], [[2rtr]], [[5jd2]], [[5vkx]], [[5vl5]], [[5vl8]], [[5wba]], [[6anx]], [[6gh7]], [[4irw]], [[2wpu]], [[4cpf]], [[4cpe]], [[3wyp]], [[5wbc]], [[5l3y]], [[5k68]], [[5k67]] – StrAv +biotin derivative<br />
+
**[[1df8]], [[1mep]], [[1n43]], [[1n9m]], [[1ndj]], [[1swg]], [[3rdm]], [[3rdo]], [[4ekv]], [[6aul]], [[4yvb]], [[1swk]], [[1swn]], [[1swp]], [[1swr]], [[1swt]], [[3mg5]], [[2y3f]], [[3t6f]], [[3wyq]], [[6vjk]], [[6vjl]] - StrAv (mutant) +biotin<br />
 +
**[[1lcv]], [[1lcw]], [[1lcz]], [[1i9h]], [[2izl]], [[2rtl]], [[2rtm]], [[2rtn]], [[2rto]], [[2rtp]], [[2rtq]], [[2rtr]], [[5jd2]], [[5vkx]], [[5vl5]], [[5vl8]], [[5wba]], [[6anx]], [[6gh7]], [[4irw]], [[2wpu]], [[4cpf]], [[4cpe]], [[3wyp]], [[5wbc]], [[5l3y]], [[5k68]], [[5k67]], [[7nlv]] – StrAv +biotin derivative<br />
**[[1nc9]], [[3rdq]], [[6auc]], [[6aue]], [[6auh]], [[6auo]], [[6fh8]], [[6fry]], [[1rxh]], [[5wbb]], [[5wbd]], [[6ess]], [[6esu]], [[6gmi]], [[5f2b]], [[5cse]], [[4oka]], [[4cpi]], [[4cph]], [[4bx7]], [[3x00]], [[3wzq]], [[3wzp]], [[3wzn]], [[3wzo]] - StrAv (mutant)+biotin derivative<br />
**[[1nc9]], [[3rdq]], [[6auc]], [[6aue]], [[6auh]], [[6auo]], [[6fh8]], [[6fry]], [[1rxh]], [[5wbb]], [[5wbd]], [[6ess]], [[6esu]], [[6gmi]], [[5f2b]], [[5cse]], [[4oka]], [[4cpi]], [[4cph]], [[4bx7]], [[3x00]], [[3wzq]], [[3wzp]], [[3wzn]], [[3wzo]] - StrAv (mutant)+biotin derivative<br />
**[[3rdu]], [[5to2]] - StrAv (mutant) + PEG<br />
**[[3rdu]], [[5to2]] - StrAv (mutant) + PEG<br />
Line 40: Line 44:
**[[2izk]], [[2rth]], [[2rti]], [[2rtj]], [[2rtk]] – StrAV +glycouril<br />
**[[2izk]], [[2rth]], [[2rti]], [[2rtj]], [[2rtk]] – StrAV +glycouril<br />
**[[6avk]] – StrAv + oxazole derivative<br />
**[[6avk]] – StrAv + oxazole derivative<br />
-
**[[5b5g]], [[5b5f]], [[4y5d]], [[4y59]] – StrAv + pyridine derivative<br />
+
**[[5b5g]], [[5b5f]], [[4y5d]], [[4y59]], [[6t1e]], [[6t1g]], [[6t1k]], [[6t2l]], [[6t2y]], [[6t2z]], [[6t30]], [[6t31]], [[6t32]], [[6y25]], [[6y2m]], [[6y2t]], [[6y33]], [[6y34]], [[6y3q]] – StrAv + pyridine derivative<br />
 +
**[[6ui0]], [[6uiu]], [[6uiz]], [[6us6]] – StrAv (mutant) + pyridine derivative<br />
 +
**[[6s4q]], [[6s50]] – StrAv + imidazole derivative<br />
 +
**[[6vo9]], [[6vob]], [[6voz]], [[6vp1]], [[6vp2]], [[6vp3]], [[7kby]], [[7kbz]] – StrAv (mutant) + imidazole derivative<br />
 +
**[[6ud6]], [[6udb]] – StrAv + coumarin derivative<br />
 +
**[[8aqd]], [[8aqj]] – StrAv + probe<br />
 +
**[[7zx9]], [[7zxz]] – StrAv + fluorescent substrate<br />
 +
**[[7zof]] – StrAv + iron-porphyrin<br />
*Streptavidin residues 1-129
*Streptavidin residues 1-129
Line 69: Line 80:
**[[4z6j]] – HpAv – ''Hoeflea phototrophica''<br />
**[[4z6j]] – HpAv – ''Hoeflea phototrophica''<br />
 +
**[[6rtq]] – HpAv (mutant)<br />
**[[4z27]] – HpAv short <br />
**[[4z27]] – HpAv short <br />
**[[4z28]] – HpAv short + biotin <br />
**[[4z28]] – HpAv short + biotin <br />
Line 85: Line 97:
**[[6hdt]] – ApAv residues 1-131 + biotin<br />
**[[6hdt]] – ApAv residues 1-131 + biotin<br />
**[[6hdv]] – ApAv residues 1-136<br />
**[[6hdv]] – ApAv residues 1-136<br />
 +
 +
* Wilavidin
 +
 +
**[[7our]], [[7p8y]] – GbAv – ''Gammaproteoteobacteia bacterium''<br />
 +
**[[7ouq]], [[7p8z]] – GbAv + biotin <br />
* Zebavidin
* Zebavidin
Line 102: Line 119:
**[[2mf6]] - cAVR4/Av (mutant)+biotin – NMR<br />
**[[2mf6]] - cAVR4/Av (mutant)+biotin – NMR<br />
}}
}}
 +
[[Category:Topic Page]]

Current revision

3D structures of Avidin

Updated on 23-October-2022

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

Retrieved from "http://52.214.119.220/wiki/index.php/Avidin_3D_structures"
Personal tools