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DUTPase 3D structures

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(New page: ==3D structures of dUTPase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *DUTP **1q5u - hDUTP – human<br...)
Current revision (09:07, 21 December 2022) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 7: Line 7:
**[[1q5u]] - hDUTP – human<br />
**[[1q5u]] - hDUTP – human<br />
 +
**[[7bpd]] - DUTP – pig<br />
 +
**[[3hhq]] - yDUTP – yeast<br />
**[[1dup]], [[1eu5]], [[1euw]] – EcDUTP – ''Escherichia coli''<br />
**[[1dup]], [[1eu5]], [[1euw]] – EcDUTP – ''Escherichia coli''<br />
-
**[[1dun]] – EvDUTP – Equine infectious anemia virus<br />
 
**[[1mq7]] – MtDUTP – ''Mycobacterium tuberculosis''<br />
**[[1mq7]] – MtDUTP – ''Mycobacterium tuberculosis''<br />
**[[4gk6]] - DUTP – ''Mycobacterium abscessus''<br />
**[[4gk6]] - DUTP – ''Mycobacterium abscessus''<br />
**[[1ogl]] – TcDUTP – ''Trypanosoma cruzi''<br />
**[[1ogl]] – TcDUTP – ''Trypanosoma cruzi''<br />
-
**[[2d4l]] - MPmvDUTP residues 83-234 – Mason_Pfizer monkey virus<br />
 
-
**[[2d4m]] - MPmvDUTP residues 83-234 (mutant) <br />
 
-
**[[2okb]], [[2okd]] - VvDUTP – Vaccinia virus<br />
 
-
**[[3hhq]] - yDUTP – yeast<br />
 
**[[3lqw]] - DUTP – ''Entamoeba histolytica''<br />
**[[3lqw]] - DUTP – ''Entamoeba histolytica''<br />
**[[3mbq]], [[3mdx]] - DUTP – ''Brucella melitensis''<br />
**[[3mbq]], [[3mdx]] - DUTP – ''Brucella melitensis''<br />
Line 25: Line 22:
**[[5myi]] - SaDUTP (mutant)<br />
**[[5myi]] - SaDUTP (mutant)<br />
**[[6mai]] - LpDUTP – ''Legionella pneumophila''<br />
**[[6mai]] - LpDUTP – ''Legionella pneumophila''<br />
 +
**[[7n56]] - RpDUTP – ''Rickettsia prowazekii'' <br /
 +
**[[6ky8]], [[6ljo]] - AsfvDUTP – African swine fever virus<br />
 +
**[[1dun]] – EvDUTP – Equine infectious anemia virus<br />
 +
**[[2d4l]] - MPmvDUTP residues 83-234 – Mason_Pfizer monkey virus<br />
 +
**[[2d4m]] - MPmvDUTP residues 83-234 (mutant) <br />
 +
**[[2okb]], [[2okd]] - VvDUTP – Vaccinia virus<br />
*DUTP binary complexes
*DUTP binary complexes
Line 30: Line 33:
**[[4mz5]], [[4mz6]] – hDUTP + importin subunit α-1<br />
**[[4mz5]], [[4mz6]] – hDUTP + importin subunit α-1<br />
**[[5h4j]] - hDUTP + inhibitor<br />
**[[5h4j]] - hDUTP + inhibitor<br />
 +
**[[4ooq]], [[2pc5]] – AtDUTP + Mg – ''Arabidopsis thaliana''<br />
 +
**[[3f4f]] - yDUTP + dUMP<br />
**[[1dud]] – EcDUTP + dUDP<br />
**[[1dud]] – EcDUTP + dUDP<br />
-
**[[2hrm]] - EcDUTP + dUTP derivative<br />
+
**[[2hrm]], [[6hde]] - EcDUTP (mutant) + dUTP derivative<br />
-
**[[1seh]] - EcDUTP + dUMP<br />
+
**[[1seh]] - EcDUTP + dUMP<br />
-
**[[3f4f]] - yDUTP + dUMP<br />
+
-
**[[1dut]] – DUTP + Mg – Feline immunodeficiency virus<br />
+
**[[1ogk]] – TcDUTP + dUTP<br />
**[[1ogk]] – TcDUTP + dUTP<br />
**[[1smc]] - MtDUTP + dUTP<br />
**[[1smc]] - MtDUTP + dUTP<br />
Line 41: Line 44:
**[[1vyq]], [[3t60]], [[3t64]], [[3t6y]], [[3t70]] - PfDUTP + uridine derivative inhibitor – ''Plasmodium falciparum''<br />
**[[1vyq]], [[3t60]], [[3t64]], [[3t6y]], [[3t70]] - PfDUTP + uridine derivative inhibitor – ''Plasmodium falciparum''<br />
**[[2y8c]] - PfDUTP + trityl ligand<br />
**[[2y8c]] - PfDUTP + trityl ligand<br />
-
**[[2bsy]], [[2we0]] - EbvDUTP + dUMP – Epstein-Barr virus<br />
 
-
**[[2we1]], [[2we2]] - EbvDUTP (mutant) + dUMP<br />
 
-
**[[2ol1]] - VvDUTP + dUMP<br />
 
**[[2y1t]] - BsDUTP + dUDP<br />
**[[2y1t]] - BsDUTP + dUDP<br />
**[[4ao5]] - BsDUTP + dUMP<br />
**[[4ao5]] - BsDUTP + dUMP<br />
**[[2yb0]] - LmDUTP + dU – ''Leishmania major''<br />
**[[2yb0]] - LmDUTP + dU – ''Leishmania major''<br />
**[[3tq5]], [[3trl]], [[3trn]], [[3ts6]], [[3tsl]], [[3tta]] - MPmvDUTP catalytic domain (mutant) + dUMP<br />
**[[3tq5]], [[3trl]], [[3trn]], [[3ts6]], [[3tsl]], [[3tta]] - MPmvDUTP catalytic domain (mutant) + dUMP<br />
-
**[[4ooq]], [[2pc5]] – AtDUTP + Mg – ''Arabidopsis thaliana''<br />
 
-
**[[3zf0]], [[3zf1]], [[3zf2]], [[3zf3]], [[3zf4]], [[3zf5]], [[3zf6]], [[5cct]], [[5nyz]], [[5nz2]] - SpDUTP (mutant) + dUTP derivative – ''Staphylococcus'' phage 80α<br />
 
-
**[[5cco]] - SpDUTP + dUMP <br />
 
-
**[[4gv8]] - DUTP + dUTP derivative – ''Staphylococcus'' phage 11<br />
 
-
**[[4wrk]] - DUTP (mutant) + dUTP derivative – ''Staphylococcus'' phage φ11<br />
 
**[[5myd]] - DUTP + dUTP derivative – ''Staphylococcus'' <br />
**[[5myd]] - DUTP + dUTP derivative – ''Staphylococcus'' <br />
**[[6mao]] - LpDUTP + dUMP <br />
**[[6mao]] - LpDUTP + dUMP <br />
 +
**[[7n6s]] - RpDUTP + dUMP – ''Rickettsia prowazekii'' <br />
 +
**[[1dut]] – DUTP + Mg – Feline immunodeficiency virus<br />
 +
**[[2bsy]], [[2we0]] - EbvDUTP + dUMP – Epstein-Barr virus<br />
 +
**[[2we1]], [[2we2]] - EbvDUTP (mutant) + dUMP<br />
 +
**[[2ol1]] - VvDUTP + dUMP<br />
 +
**[[3zez]] - SpDUTP + dUTP derivative – ''Staphylococcus'' phage 80a<br />
 +
**[[3zf0]], [[3zf1]], [[3zf2]], [[3zf3]], [[3zf4]], [[3zf5]], [[3zf6]], [[5cct]], [[5nyz]], [[5nz2]] - SpDUTP (mutant) + dUTP derivative <br />
 +
**[[5cco]] - SpDUTP + dUMP <br />
 +
**[[4gv8]] - SppDUTP + dUTP derivative – ''Staphylococcus'' phage 11<br />
 +
**[[4wrk]] - SppDUTP (mutant) + dUTP derivative <br />
 +
**[[6h4c]] - SppDUTP + Orf20 <br />
 +
**[[6lis]], [[6ky9]] - AsfvDUTP + dUMP <br />
*DUTP ternary complexes
*DUTP ternary complexes
 +
**[[2hqu]] - hDUTP + Mg + dUTP derivative <br />
 +
**[[1q5h]] - hDUTP + Mg + dUDP<br />
 +
**[[3ehw]] - hDUTP + Mg + dUTP<br />
 +
**[[3ara]], [[3arn]] - hDUTP + Mg + uracil derivative<br />
 +
**[[7dlv]] - DUTP + Ca + Orf20 - shrimp<br />
 +
**[[4oop]] - AtDUTP + Mg + dUTP derivative<br />
 +
**[[5f9k]] - DUTP + Mg + dUTP derivative – slime mold<br />
 +
**[[3p48]] - yDUTP + Mg + dUTP derivative<br />
**[[1duc]] – EvDUPT + Sr + dUTP<br />
**[[1duc]] – EvDUPT + Sr + dUTP<br />
-
**[[1six]], [[1sjn]], [[2py4]] – MtDUTP + Mg + dUTP derivative<br />
 
-
**[[3h6d]], [[3hza]], [[3i93]] - MtDUTP (mutant) + Mg + dUTP derivative<br />
 
-
**[[3loj]] - MtDUTP (mutant) + Mg + Mn + dUTP derivative<br />
 
**[[1rn8]] - EcDUTP + Mg + dUTP derivative<br />
**[[1rn8]] - EcDUTP + Mg + dUTP derivative<br />
**[[1rnj]] - EcDUTP (mutant) + Mg + dUTP derivative<br />
**[[1rnj]] - EcDUTP (mutant) + Mg + dUTP derivative<br />
Line 70: Line 82:
**[[1sm8]] – MtDUTP + Cr + dUTP<br />
**[[1sm8]] – MtDUTP + Cr + dUTP<br />
**[[1snf]] - MtDUTP + Mg + dUMP<br />
**[[1snf]] - MtDUTP + Mg + dUMP<br />
 +
**[[1six]], [[1sjn]], [[2py4]] – MtDUTP + Mg + dUTP derivative<br />
 +
**[[3h6d]], [[3hza]], [[3i93]] - MtDUTP (mutant) + Mg + dUTP derivative<br />
 +
**[[3loj]] - MtDUTP (mutant) + Mg + Mn + dUTP derivative<br />
**[[1w2y]], [[2cic]] - DUTP + Mg + dUTP derivative – ''Campylobacter jejuni''<br />
**[[1w2y]], [[2cic]] - DUTP + Mg + dUTP derivative – ''Campylobacter jejuni''<br />
-
**[[5f9k]] - DUTP + Mg + dUTP derivative – slime mold<br />
+
**[[2cje]] - LmDUTP + Mg + dUTP derivative<br />
 +
**[[2yay]] - LmDUTP + Ca + dUTP derivative<br />
 +
**[[2yaz]] - LmDUTP + Mg + dUMP<br />
 +
**[[2xy3]] - BsDUTP + Mg + dUTP derivative<br />
 +
**[[4aoo]], [[4apz]], [[4aoz]] - BsDUTP + Mg + PPi + uridine<br />
 +
**[[6mjk]] – DUTP + Mg + deoxyuridine – ''Naegleria fowleri''<br />
**[[2bt1]] - EbvDUTP + Mg + dUTP derivative<br />
**[[2bt1]] - EbvDUTP + Mg + dUTP derivative<br />
**[[2we3]] - EbvDUTP residues 1-256 + Mg + dUTP<br />
**[[2we3]] - EbvDUTP residues 1-256 + Mg + dUTP<br />
Line 78: Line 98:
**[[3tpw]], [[3tpn]], [[3tps]] - MPmvDUTP catalytic domain (mutant) + Mg + dUTP derivative<br />
**[[3tpw]], [[3tpn]], [[3tps]] - MPmvDUTP catalytic domain (mutant) + Mg + dUTP derivative<br />
**[[3tpy]], [[3tq3]], [[3tq4]] - MPmvDUTP catalytic domain + Mg + dUMP + dUTP derivative<br />
**[[3tpy]], [[3tq3]], [[3tq4]] - MPmvDUTP catalytic domain + Mg + dUMP + dUTP derivative<br />
-
**[[2cje]] - LmDUTP + Mg + dUTP derivative<br />
 
-
**[[2yay]] - LmDUTP + Ca + dUTP derivative<br />
 
-
**[[2yaz]] - LmDUTP + Mg + dUMP<br />
 
**[[2oke]] - VvDUTP + Mg + dUTP derivative<br />
**[[2oke]] - VvDUTP + Mg + dUTP derivative<br />
**[[2ol0]] - VvDUTP + Mg + dUDP<br />
**[[2ol0]] - VvDUTP + Mg + dUDP<br />
**[[3c3i]] - PbcvDUTP (mutant) + Mg + dUDP – Paramecium bursaria chlorella virus<br />
**[[3c3i]] - PbcvDUTP (mutant) + Mg + dUDP – Paramecium bursaria chlorella virus<br />
**[[3c2t]], [[3ca9]] - PbcvDUTP + Mg + dUDP<br />
**[[3c2t]], [[3ca9]] - PbcvDUTP + Mg + dUDP<br />
-
**[[2hqu]] - hDUTP + Mg + dUTP derivative <br />
+
**[[6lj3]], [[6ljj]], [[6kz6]] - AsfvDUTP + Mg + dUTP derivative <br />
-
**[[1q5h]] - hDUTP + Mg + dUDP<br />
+
 
-
**[[3ehw]] - hDUTP + Mg + dUTP<br />
+
-
**[[3ara]], [[3arn]] - hDUTP + Mg + uracil derivative<br />
+
-
**[[3p48]] - yDUTP + Mg + dUTP derivative<br />
+
-
**[[2xy3]] - BsDUTP + Mg + dUTP derivative<br />
+
-
**[[4oop]] - AtDUTP + Mg + dUTP derivative<br />
+
-
**[[4aoo]], [[4apz]], [[4aoz]] - BsDUTP + Mg + PPi + uridine<br />
+
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

3D structures of dUTPase

Updated on 21-December-2022

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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