User:Michael Scott Thomas/Sandbox 2

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==Your Heading Here (maybe something like 'Structure')==
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== GC receptor shenanigans==
<StructureSection load='3bqd' size='340' side='right' caption='Caption for this structure' scene=''>
<StructureSection load='3bqd' size='340' side='right' caption='Caption for this structure' scene=''>
This is a default text for your page '''Michael Scott Thomas/Sandbox 2'''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
This is a default text for your page '''Michael Scott Thomas/Sandbox 2'''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
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== Important Bonds ==
== Important Bonds ==
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<scene name='81/817570/Newarg611/3'>R611</scene>
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<scene name='81/817570/Newarg611/6'>R611</scene>
<scene name='81/817570/Newgln570/3'>Q570</scene>
<scene name='81/817570/Newgln570/3'>Q570</scene>
<scene name='81/817570/A607/5'>A607</scene>
<scene name='81/817570/A607/5'>A607</scene>
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<scene name='81/817570/Leu608/1'>L608</scene>
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<scene name='81/817570/Met604/1'>M604</scene>
== Binding Pocket ==
== Binding Pocket ==
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<scene name='81/817570/Grbindingpocket1/2'>Attempt at showing the binding pocket</scene>
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<scene name='81/817570/Grbindingpocket1/3'>Attempt at showing the binding pocket</scene>
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== Interpreting Synthetic Glucocorticoid Kds ==
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This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
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<scene name='81/817570/Interpretingdpa/1'>DPA</scene> has the highest kd (bad binding affinity).
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[[Image:Dpachemdraw.png]]
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[[Image:Betterdpapic.png]]
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DPFB... Has the smallest kd (best binding affinity).
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[[Image:DPFBchemdraw.png]]
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[[Image:DPFBpic.png]]
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== Predicting Synthetic Glucocortioid Kds ==
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PYR2 we know nothing about this guys kd.
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[[Image:PYR2chemdraw.png]]
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[[Image:PYR2.png]]
</StructureSection>
</StructureSection>
== References ==
== References ==
<references/>
<references/>

Current revision

GC receptor shenanigans

Caption for this structure

Drag the structure with the mouse to rotate

References

  1. ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644

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Michael Scott Thomas

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