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2z6b

From Proteopedia

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(New page: 200px <!-- The line below this paragraph, containing "STRUCTURE_2z6b", creates the "Structure Box" on the page. You may change the PDB parameter (which sets the PD...)
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[[Image:2z6b.jpg|left|200px]]
 
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==Crystal Structure Analysis of (gp27-gp5)3 conjugated with Fe(III) protoporphyrin==
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The line below this paragraph, containing "STRUCTURE_2z6b", creates the "Structure Box" on the page.
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<StructureSection load='2z6b' size='340' side='right'caption='[[2z6b]], [[Resolution|resolution]] 3.11&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2z6b]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z6B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Z6B FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.11&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NEN:1-ETHYL-PYRROLIDINE-2,5-DIONE'>NEN</scene></td></tr>
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{{STRUCTURE_2z6b| PDB=2z6b | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2z6b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z6b OCA], [https://pdbe.org/2z6b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2z6b RCSB], [https://www.ebi.ac.uk/pdbsum/2z6b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2z6b ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/NEEDL_BPT4 NEEDL_BPT4] Tail-associated lysozyme of the baseplate hub that is essential for localized hydrolysis of bacterial cell wall necessary for viral DNA injection. The needle-like gp5 protein punctures the outer cell membrane and then digests the peptidoglycan cell wall in the periplasmic space. Involved in the tail assembly.<ref>PMID:12837775</ref> <ref>PMID:21129200</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z6/2z6b_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2z6b ConSurf].
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<div style="clear:both"></div>
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'''Crystal Structure Analysis of (gp27-gp5)3 conjugated with Fe(III) protoporphyrin'''
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==See Also==
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*[[Lysozyme 3D structures|Lysozyme 3D structures]]
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== References ==
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==About this Structure==
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<references/>
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2Z6B is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z6B OCA].
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__TOC__
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</StructureSection>
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==Reference==
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[[Category: Escherichia virus T4]]
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Molecular design of heteroprotein assemblies providing a bionanocup as a chemical reactor., Koshiyama T, Yokoi N, Ueno T, Kanamaru S, Nagano S, Shiro Y, Arisaka F, Watanabe Y, Small. 2008 Jan;4(1):50-4. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18098245 18098245]
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[[Category: Large Structures]]
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[[Category: Enterobacteria phage t4]]
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[[Category: Arisaka F]]
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[[Category: Lysozyme]]
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[[Category: Kanamaru S]]
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[[Category: Protein complex]]
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[[Category: Koshiyama T]]
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[[Category: Arisaka, F.]]
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[[Category: Nagano S]]
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[[Category: Kanamaru, S.]]
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[[Category: Shiro Y]]
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[[Category: Koshiyama, T.]]
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[[Category: Ueno T]]
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[[Category: Nagano, S.]]
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[[Category: Watanabe Y]]
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[[Category: Shiro, Y.]]
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[[Category: Yokoi N]]
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[[Category: Ueno, T.]]
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[[Category: Watanabe, Y.]]
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[[Category: Yokoi, N.]]
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[[Category: Antimicrobial]]
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[[Category: Bacteriolytic enzyme]]
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[[Category: Glycosidase]]
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[[Category: Hydrolase]]
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[[Category: Hydrolase/structural protein complex]]
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[[Category: Late protein]]
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[[Category: Protein containing metal complex]]
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[[Category: Virion]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 16 23:10:49 2008''
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Current revision

Crystal Structure Analysis of (gp27-gp5)3 conjugated with Fe(III) protoporphyrin

PDB ID 2z6b

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