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6nf5

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'''Unreleased structure'''
 
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The entry 6nf5 is ON HOLD until Paper Publication
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==BG505 MD64 N332-GT5 SOSIP trimer in complex with BG18-like precursor HMP1 fragmentantigen binding and base-binding RM20A3 fragment antigen binding==
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<SX load='6nf5' size='340' side='right' viewer='molstar' caption='[[6nf5]], [[Resolution|resolution]] 3.71&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6nf5]] is a 18 chain structure with sequence from [http://en.wikipedia.org/wiki/9hiv1 9hiv1], [http://en.wikipedia.org/wiki/Human Human] and [http://en.wikipedia.org/wiki/Macmu Macmu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NF5 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6NF5 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">V2-17 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6nf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nf5 OCA], [http://pdbe.org/6nf5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nf5 RCSB], [http://www.ebi.ac.uk/pdbsum/6nf5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nf5 ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Vaccine induction of broadly neutralizing antibodies (bnAbs) to human immunodeficiency virus (HIV) remains a major challenge. Germline-targeting immunogens hold promise for initiating the induction of certain bnAb classes; yet for most bnAbs, a strong dependence on antibody heavy chain complementarity determining region 3 (HCDR3) is a major barrier. Exploiting ultra-deep human antibody sequencing data, we identified a diverse set of potential antibody precursors for a bnAb with dominant HCDR3 contacts. We then developed HIV envelope trimer-based immunogens that primed responses from rare bnAb-precursor B cells in a mouse model, and in ex-vivo screens bound a range of potential bnAb-precursor human naive B cells. Our repertoire-guided germline-targeting approach provides a framework for priming the induction of many HIV bnAbs, and could be applied to most HCDR3-dominant antibodies from other pathogens.
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Authors: Ozorowski, G., Torres, J.L., Steichen, J.M., Schief, W.R., Ward, A.B.
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A generalized HIV vaccine design strategy for priming of broadly neutralizing antibody responses.,Steichen JM, Lin YC, Havenar-Daughton C, Pecetta S, Ozorowski G, Willis JR, Toy L, Sok D, Liguori A, Kratochvil S, Torres JL, Kalyuzhniy O, Melzi E, Kulp DW, Raemisch S, Hu X, Bernard SM, Georgeson E, Phelps N, Adachi Y, Kubitz M, Landais E, Umotoy J, Robinson A, Briney B, Wilson IA, Burton DR, Ward AB, Crotty S, Batista FD, Schief WR Science. 2019 Oct 31. pii: science.aax4380. doi: 10.1126/science.aax4380. PMID:31672916<ref>PMID:31672916</ref>
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Description: BG505 MD64 N332-GT5 SOSIP trimer in complex with BG18-like precursor HMP1 fragmentantigen binding and base-binding RM20A3 fragment antigen binding
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Ward, A.B]]
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<div class="pdbe-citations 6nf5" style="background-color:#fffaf0;"></div>
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[[Category: Schief, W.R]]
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== References ==
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[[Category: Steichen, J.M]]
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<references/>
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__TOC__
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</SX>
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[[Category: Human]]
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[[Category: Large Structures]]
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[[Category: Macmu]]
[[Category: Ozorowski, G]]
[[Category: Ozorowski, G]]
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[[Category: Torres, J.L]]
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[[Category: Schief, W R]]
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[[Category: Steichen, J M]]
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[[Category: Torres, J L]]
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[[Category: Ward, A B]]
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[[Category: Antibody]]
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[[Category: Hiv envelope]]
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[[Category: Hiv-1]]
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[[Category: Precursor antibody]]
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[[Category: Sosip]]
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[[Category: Trimer]]
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[[Category: Viral protein]]
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[[Category: Viral protein-immune system complex]]

Current revision

BG505 MD64 N332-GT5 SOSIP trimer in complex with BG18-like precursor HMP1 fragmentantigen binding and base-binding RM20A3 fragment antigen binding

6nf5, resolution 3.71Å

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