6s15

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: '''Unreleased structure''' The entry 6s15 is ON HOLD Authors: Ferraroni, M., Bazzicalupi, C., Gratteri, P., Papi, F. Description: Pyridine derivative of the natural alkaloid Berberine ...)
Current revision (12:32, 24 January 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 6s15 is ON HOLD
+
==Pyridine derivative of the natural alkaloid Berberine as Human Telomeric G-quadruplex Binder==
 +
<StructureSection load='6s15' size='340' side='right'caption='[[6s15]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[6s15]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S15 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6S15 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=KQT:Berberine'>KQT</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6s15 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s15 OCA], [https://pdbe.org/6s15 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6s15 RCSB], [https://www.ebi.ac.uk/pdbsum/6s15 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6s15 ProSAT]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Telomerase is an enzyme deputed to the maintenance of eukaryotic chromosomes; however, its overexpression is a recognized hallmark of many cancer forms. A viable route for the inhibition of telomerase in malignant cells is the stabilization of G-quadruplex structures (G(4)) at the 3' overhang of telomeres. Berberine has shown in this regard valuable G(4) binding properties together with a significant anticancer activity and telomerase inhibition effects. Here, we focused on a berberine derivative featuring a pyridine containing side group at the 13th position. Such modification actually improves the binding toward telomeric G-quadruplexes and establishes a degree of selectivity in the interaction with different sequences. Moreover, the X-ray crystal structure obtained for the complex formed by the ligand and a bimolecular human telomeric quadruplex affords a better understanding of the 13-berberine derivatives behavior with telomeric G(4) and allows to draw useful insights for the future design of derivatives with remarkable anticancer properties.
-
Authors: Ferraroni, M., Bazzicalupi, C., Gratteri, P., Papi, F.
+
Pyridine Derivative of the Natural Alkaloid Berberine as Human Telomeric G(4)-DNA Binder: A Solution and Solid-State Study.,Papi F, Bazzicalupi C, Ferraroni M, Ciolli G, Lombardi P, Khan AY, Kumar GS, Gratteri P ACS Med Chem Lett. 2020 Feb 7;11(5):645-650. doi: 10.1021/acsmedchemlett.9b00516. , eCollection 2020 May 14. PMID:32435365<ref>PMID:32435365</ref>
-
Description: Pyridine derivative of the natural alkaloid Berberine as Human Telomeric G-quadruplex Binder
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Gratteri, P]]
+
<div class="pdbe-citations 6s15" style="background-color:#fffaf0;"></div>
-
[[Category: Ferraroni, M]]
+
== References ==
-
[[Category: Papi, F]]
+
<references/>
-
[[Category: Bazzicalupi, C]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Synthetic construct]]
 +
[[Category: Bazzicalupi C]]
 +
[[Category: Ferraroni M]]
 +
[[Category: Gratteri P]]
 +
[[Category: Papi F]]

Current revision

Pyridine derivative of the natural alkaloid Berberine as Human Telomeric G-quadruplex Binder

PDB ID 6s15

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools