6s24

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(New page: '''Unreleased structure''' The entry 6s24 is ON HOLD Authors: Description: Category: Unreleased Structures)
Current revision (12:33, 24 January 2024) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 6s24 is ON HOLD
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==Crystal structure of the TgGalNAc-T3 in complex with UDP, manganese and the peptide 3==
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<StructureSection load='6s24' size='340' side='right'caption='[[6s24]], [[Resolution|resolution]] 2.12&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6s24]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Taeniopygia_guttata Taeniopygia guttata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S24 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6S24 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.12&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=TAM:TRIS(HYDROXYETHYL)AMINOMETHANE'>TAM</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6s24 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s24 OCA], [https://pdbe.org/6s24 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6s24 RCSB], [https://www.ebi.ac.uk/pdbsum/6s24 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6s24 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/GALT3_TAEGU GALT3_TAEGU] Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor (PubMed:31932717). Glycosylates FGF23 (PubMed:31932717).<ref>PMID:31932717</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Polypeptide GalNAc-transferase T3 (GalNAc-T3) regulates fibroblast growth factor 23 (FGF23) by O-glycosylating Thr178 in a furin proprotein processing motif RHT(178)R downward arrowS. FGF23 regulates phosphate homeostasis and deficiency in GALNT3 or FGF23 results in hyperphosphatemia and familial tumoral calcinosis. We explored the molecular mechanism for GalNAc-T3 glycosylation of FGF23 using engineered cell models and biophysical studies including kinetics, molecular dynamics and X-ray crystallography of GalNAc-T3 complexed to glycopeptide substrates. GalNAc-T3 uses a lectin domain mediated mechanism to glycosylate Thr178 requiring previous glycosylation at Thr171. Notably, Thr178 is a poor substrate site with limiting glycosylation due to substrate clashes leading to destabilization of the catalytic domain flexible loop. We suggest GalNAc-T3 specificity for FGF23 and its ability to control circulating levels of intact FGF23 is achieved by FGF23 being a poor substrate. GalNAc-T3's structure further reveals the molecular bases for reported disease-causing mutations. Our findings provide an insight into how GalNAc-T isoenzymes achieve isoenzyme-specific nonredundant functions.
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Authors:
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Molecular basis for fibroblast growth factor 23 O-glycosylation by GalNAc-T3.,de Las Rivas M, Paul Daniel EJ, Narimatsu Y, Companon I, Kato K, Hermosilla P, Thureau A, Ceballos-Laita L, Coelho H, Bernado P, Marcelo F, Hansen L, Maeda R, Lostao A, Corzana F, Clausen H, Gerken TA, Hurtado-Guerrero R Nat Chem Biol. 2020 Jan 13. pii: 10.1038/s41589-019-0444-x. doi:, 10.1038/s41589-019-0444-x. PMID:31932717<ref>PMID:31932717</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 6s24" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Taeniopygia guttata]]
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[[Category: Bernado P]]
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[[Category: Ceballos-Laita L]]
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[[Category: Clausen H]]
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[[Category: Coelho H]]
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[[Category: Companon I]]
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[[Category: Corzana F]]
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[[Category: Daniel EJP]]
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[[Category: Gerken TA]]
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[[Category: Hansen L]]
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[[Category: Hermosilla P]]
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[[Category: Hurtado-Guerrero R]]
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[[Category: Kato K]]
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[[Category: Lostao A]]
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[[Category: Marcelo F]]
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[[Category: Narimatsu Y]]
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[[Category: Thureau A]]
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[[Category: De las Rivas M]]

Current revision

Crystal structure of the TgGalNAc-T3 in complex with UDP, manganese and the peptide 3

PDB ID 6s24

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