6p9e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:25, 11 October 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='6p9e' size='340' side='right'caption='[[6p9e]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='6p9e' size='340' side='right'caption='[[6p9e]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6p9e]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6P9E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6P9E FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6p9e]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6P9E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6P9E FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=O6D:(2S)-2-{[4-(3-amino-4-methylphenyl)-6-methylpyrimidin-2-yl]oxy}-3-methoxy-3,3-diphenylpropanoic+acid'>O6D</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6p9e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6p9e OCA], [http://pdbe.org/6p9e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6p9e RCSB], [http://www.ebi.ac.uk/pdbsum/6p9e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6p9e ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=O6D:(2S)-2-{[4-(3-amino-4-methylphenyl)-6-methylpyrimidin-2-yl]oxy}-3-methoxy-3,3-diphenylpropanoic+acid'>O6D</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6p9e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6p9e OCA], [https://pdbe.org/6p9e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6p9e RCSB], [https://www.ebi.ac.uk/pdbsum/6p9e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6p9e ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/IL36G_HUMAN IL36G_HUMAN]] Function as an agonist of NF-kappa B activation through the orphan IL-1-receptor-related protein 2/IL1RL2. Could constitute part of an independent signaling system analogous to interleukin-1 alpha (IL-1A), beta (IL-1B) receptor agonist and interleukin-1 receptor type I (IL-1R1), that is present in epithelial barriers and takes part in local inflammatory response.
+
[https://www.uniprot.org/uniprot/IL36G_HUMAN IL36G_HUMAN] Function as an agonist of NF-kappa B activation through the orphan IL-1-receptor-related protein 2/IL1RL2. Could constitute part of an independent signaling system analogous to interleukin-1 alpha (IL-1A), beta (IL-1B) receptor agonist and interleukin-1 receptor type I (IL-1R1), that is present in epithelial barriers and takes part in local inflammatory response.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
IL-36 cytokines are pro-inflammatory members of the IL-1 family that are upregulated in inflammatory disorders. Specifically, IL-36gamma is highly expressed in active psoriatic lesions and can drive pro-inflammatory processes in 3D human skin equivalents supporting a role for this target in skin inflammation. Small molecule antagonists of interleukins have been historically challenging to generate. Nevertheless, we performed a small molecule high-throughput screen to identify IL-36 antagonists using a novel TR-FRET binding assay. Several compounds, including 2-oxypyrimidine containing structural analogs of the marketed endothelin receptor A antagonist Ambrisentan, were identified as hits from the screen. A-552 was identified as a the most potent antagonist of human IL-36gamma, but not the closely related family member IL-36alpha, was capable of attenuating IL-36gamma induced responses in mouse and human disease models. Additionally, x-ray crystallography studies identified key amino acid residues in the binding pocket present in human IL-36gamma that are absent in human IL-36alpha. A-552 represents a first-in-class small molecule antagonist of IL-36 signaling that could be used as a chemical tool to further investigate the role of this pathway in inflammatory skin diseases such as psoriasis.
 +
 
 +
Small Molecule IL-36gamma Antagonist as a Novel Therapeutic Approach for Plaque Psoriasis.,Todorovic V, Su Z, Putman CB, Kakavas SJ, Salte KM, McDonald HA, Wetter JB, Paulsboe SE, Sun Q, Gerstein CE, Medina L, Sielaff B, Sadhukhan R, Stockmann H, Richardson PL, Qiu W, Argiriadi MA, Henry RF, Herold JM, Shotwell JB, McGaraughty SP, Honore P, Gopalakrishnan SM, Sun CC, Scott VE Sci Rep. 2019 Jun 24;9(1):9089. doi: 10.1038/s41598-019-45626-w. PMID:31235749<ref>PMID:31235749</ref>
 +
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 6p9e" style="background-color:#fffaf0;"></div>
 +
 
 +
==See Also==
 +
*[[Interleukin 3D structures|Interleukin 3D structures]]
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Argiriadi, M A]]
+
[[Category: Argiriadi MA]]
-
[[Category: Gerstein, C E]]
+
[[Category: Gerstein CE]]
-
[[Category: Gopalakrishnan, S M]]
+
[[Category: Gopalakrishnan SM]]
-
[[Category: Henry, R F]]
+
[[Category: Henry RF]]
-
[[Category: Herold, J M]]
+
[[Category: Herold JM]]
-
[[Category: Honore, P]]
+
[[Category: Honore P]]
-
[[Category: Kakavas, S J]]
+
[[Category: Kakavas SJ]]
-
[[Category: McDonald, H A]]
+
[[Category: McDonald HA]]
-
[[Category: McGaraughty, S P]]
+
[[Category: McGaraughty SP]]
-
[[Category: Medina, L]]
+
[[Category: Medina L]]
-
[[Category: Paulsboe, S E]]
+
[[Category: Paulsboe SE]]
-
[[Category: Putman, B]]
+
[[Category: Putman B]]
-
[[Category: Qiu, W]]
+
[[Category: Qiu W]]
-
[[Category: Richardson, P L]]
+
[[Category: Richardson PL]]
-
[[Category: Sadhukhan, R]]
+
[[Category: Sadhukhan R]]
-
[[Category: Salte, K M]]
+
[[Category: Salte KM]]
-
[[Category: Scott, V E]]
+
[[Category: Scott VE]]
-
[[Category: Shotwell, J B]]
+
[[Category: Shotwell JB]]
-
[[Category: Sielaff, B]]
+
[[Category: Sielaff B]]
-
[[Category: Stockmann, H]]
+
[[Category: Stockmann H]]
-
[[Category: Su, Z]]
+
[[Category: Su Z]]
-
[[Category: Sun, C C]]
+
[[Category: Sun CC]]
-
[[Category: Sun, Q]]
+
[[Category: Sun Q]]
-
[[Category: Todorovic, T]]
+
[[Category: Todorovic T]]
-
[[Category: Wetter, J B]]
+
[[Category: Wetter JB]]
-
[[Category: Cytokine]]
+
-
[[Category: Il-36]]
+
-
[[Category: Small molecule antagonist]]
+

Current revision

Crystal structure of IL-36gamma complexed to A-552

PDB ID 6p9e

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools