Ferredoxin 3D structures

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(New page: ==3D structures of ferredoxin== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *2Fe-2S containing ferredoxins **[...)
Current revision (07:49, 11 June 2025) (edit) (undo)
 
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*2Fe-2S containing ferredoxins
*2Fe-2S containing ferredoxins
 +
**[[8rmc]], [[8rmd]], [[8rmf]], [[8rmg]] – hFd iron-sulfur cluster assembly complex – human – Cryo EM <br />
 +
**[[6yac]], [[6yez]] – Fd in PSI-Fd complex – pea – Cryo EM<br />
**[[2kaj]], [[1dox]], [[1doy]] – SyFd +Ga – ''Synechocystis'' – NMR <br />
**[[2kaj]], [[1dox]], [[1doy]] – SyFd +Ga – ''Synechocystis'' – NMR <br />
-
**[[3hui]], [[4ltu]] – Fd – ''Rhodopseudomonas palustris'' <br />
 
**[[1off]] – SyFd <br />
**[[1off]] – SyFd <br />
 +
**[[3hui]], [[4ltu]] – RpFd – ''Rhodopseudomonas palustris'' <br />
 +
**[[8zzd]] – RpFd + P450
**[[3gce]] – Fd – ''Nocardioides aromaticivorans'' <br />
**[[3gce]] – Fd – ''Nocardioides aromaticivorans'' <br />
**[[3lxf]] – Fd – ''Novosphingobium aromaticivorans''<br />
**[[3lxf]] – Fd – ''Novosphingobium aromaticivorans''<br />
**[[2e4p]], [[2e4q]] - Fd – ''Pseudomonas sp.'' <br />
**[[2e4p]], [[2e4q]] - Fd – ''Pseudomonas sp.'' <br />
**[[2q3w]], [[1vm9]] - PmFd (mutant) – ''Pseudomonas mendocina'' <br />
**[[2q3w]], [[1vm9]] - PmFd (mutant) – ''Pseudomonas mendocina'' <br />
-
**[[2i7f]], [[1uwm]] - RcFd – ''Rhodobacter capsulatus'' <br />
+
**[[2i7f]], [[1uwm]], [[9i2a]] - RcFd – ''Rhodobacter capsulatus'' <br />
**[[1e9m]] – RcFd - NMR<br />
**[[1e9m]] – RcFd - NMR<br />
**[[1rfk]], [[3p63]] - Fd – ''Cyanobacterium'' ''masticogladus laminosus'' <br />
**[[1rfk]], [[3p63]] - Fd – ''Cyanobacterium'' ''masticogladus laminosus'' <br />
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**[[1e10]] - Fd – ''Halobacterium halobium''<br />
**[[1e10]] - Fd – ''Halobacterium halobium''<br />
**[[1pfd]] – Fd – ''Petroselinum crispum'' – NMR <br />
**[[1pfd]] – Fd – ''Petroselinum crispum'' – NMR <br />
-
**[[1a70]] - Fd (mutant) – ''Spinacia oleracea'' <br />
+
**[[9gyd]], [[9gyn]], [[9gyr]], [[9gyl]], [[9gyu]] - SpFd – Spinach
 +
**[[1a70]] - SpFd (mutant) <br />
 +
**[[9hi3]] - SpFd 51-147 + FusB
**[[1awd]] - Fd – ''Chlorella fusca'' <br />
**[[1awd]] - Fd – ''Chlorella fusca'' <br />
**[[2cjn]], [[2cjo]], [[1roe]] – SyFd – NMR <br />
**[[2cjn]], [[2cjo]], [[1roe]] – SyFd – NMR <br />
-
**[[1rof]], [[5aui]], [[5auk]] – SyFd – ''Synechococcus elongates'' <br />
+
**[[1rof]], [[5aui]], [[5auk]], [[6iri]], [[6jo2]] – SyFd – ''Synechococcus elongatus'' <br />
**[[1doi]] - Fd – ''Haloarcula marismortui'' <br />
**[[1doi]] - Fd – ''Haloarcula marismortui'' <br />
**[[4fxc]] – Fd – ''Spirulina platensi''s <br />
**[[4fxc]] – Fd – ''Spirulina platensi''s <br />
**[[1fxi]], [[3av8]] – Fd – ''Aphanothece sacrum'' <br />
**[[1fxi]], [[3av8]] – Fd – ''Aphanothece sacrum'' <br />
-
**[[3dqy]], [[2qpz]], [[3ah7]] - Fd – ''Pseudomonas putida'' <br />
+
**[[3dqy]], [[2qpz]], [[3ah7]] - PpFd – ''Pseudomonas putida'' <br />
**[[3ab5]], [[3wcq]] – Fd – ''Cyanidioschyzon merolae''<br />
**[[3ab5]], [[3wcq]] – Fd – ''Cyanidioschyzon merolae''<br />
**[[3b2f]], [[5h57]] – mFd – maize<br />
**[[3b2f]], [[5h57]] – mFd – maize<br />
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**[[5h92]], [[5h8y]] – mFd + sulfite reductase<br />
**[[5h92]], [[5h8y]] – mFd + sulfite reductase<br />
**[[3b2g]] – Fd – ''Leptolyngbya boryana''<br />
**[[3b2g]] – Fd – ''Leptolyngbya boryana''<br />
-
**[[2mh7]] – Fd – ''Chlamydomonas reinhardtii''<br />
 
**[[1ewy]] – Fd + ferredoxin-NADP reductase - ''Nostoc''<br />
**[[1ewy]] – Fd + ferredoxin-NADP reductase - ''Nostoc''<br />
**[[5ffi]], [[5abr]] - AvFd – ''Azotobacter vinelandii''<br />
**[[5ffi]], [[5abr]] - AvFd – ''Azotobacter vinelandii''<br />
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**[[6b03]], [[6b05]], [[6brs]] – AtFd-2 + zinc protease<br />
**[[6b03]], [[6b05]], [[6brs]] – AtFd-2 + zinc protease<br />
**[[6e6s]], [[6e6r]], [[6e6q]] – PaFd (mutant)_- ''Pseudomonas aeruginosa''<br />
**[[6e6s]], [[6e6r]], [[6e6q]] – PaFd (mutant)_- ''Pseudomonas aeruginosa''<br />
 +
**[[2mh7]], [[6kum]], [[6kv0]], [[6lk1]] – CrFd – ''Chlamydomonas reinhardtii''<br />
 +
**[[7wzn]] – CrFd in photosystem I – Cryo EM<br /><br />
 +
**[[7ylr]] – Fd + FMN – ''Variovorax paradoxus''<br />
 +
**[[8rho]] - AvFd – ''Azotobacter vinelandii''
 +
**[[6vjv]] – Fd – ''Prochlorococcus'' phage<br />
*4Fe-4S containing ferredoxins
*4Fe-4S containing ferredoxins
-
**[[3eun]] – AvFd – ''Allochromatium vinosum'' <br />
+
**[[3eun]] – AlvFd – ''Allochromatium vinosum'' <br />
-
**[[3exy]] - AvFd (mutant) <br />
+
**[[3exy]] - AlvFd (mutant) <br />
**[[2vkr]] - Fd+Zn – ''Acidianus ambivalens'' <br />
**[[2vkr]] - Fd+Zn – ''Acidianus ambivalens'' <br />
**[[2z8q]] - PfFd (mutant) – ''Pyrococcus furiosus'' <br />
**[[2z8q]] - PfFd (mutant) – ''Pyrococcus furiosus'' <br />
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**[[2fgo]] - PaFd <br />
**[[2fgo]] - PaFd <br />
**[[1iqz]], [[1ir0]] - BtFd – ''Bacillus thermoproteolyticus'' <br />
**[[1iqz]], [[1ir0]] - BtFd – ''Bacillus thermoproteolyticus'' <br />
 +
**[[7yl8]] – BtFd - neutron
**[[1rgv]] - Fd – ''Thauera aromatica'' <br />
**[[1rgv]] - Fd – ''Thauera aromatica'' <br />
**[[1dax]], [[1dfd]] – DaFd – ''Desulfovibrio africanus'' – NMR <br />
**[[1dax]], [[1dfd]] – DaFd – ''Desulfovibrio africanus'' – NMR <br />
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**[[1vjw]] – Fd – ''Thermotoga maritima'' <br />
**[[1vjw]] – Fd – ''Thermotoga maritima'' <br />
**[[1dwl]] – Fd – ''Desulfomicrobium norvegicum''<br />
**[[1dwl]] – Fd – ''Desulfomicrobium norvegicum''<br />
 +
**[[7m1n]] – Fd – ''Hydrogenobacter thermophilus''<br />
*3Fe-4S containing ferredoxins
*3Fe-4S containing ferredoxins
**[[2v2k]] – Fd – ''Mycobacterium smegmatis'' <br />
**[[2v2k]] – Fd – ''Mycobacterium smegmatis'' <br />
 +
**[[8amp]] - Fd – ''Mycobacterium tuberculosis''
**[[1wtf]] - BtFd (mutant) <br />
**[[1wtf]] - BtFd (mutant) <br />
**[[1sj1]] - PfFd <br />
**[[1sj1]] - PfFd <br />
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**[[1f2g]] – DgFd – NMR <br />
**[[1f2g]] – DgFd – NMR <br />
**[[1xer]] - Fd – ''Sulfolobus tokodaii'' <br />
**[[1xer]] - Fd – ''Sulfolobus tokodaii'' <br />
 +
 +
*4Fe-4S+2Fe-2S containing ferredoxins
 +
 +
**[[6khi]] , [[6l7o]]– SyFd in photosynthetic NADPH dehydrogenase complex – Cryo EM<br />
*4Fe-4S+3Fe-4S containing ferredoxins
*4Fe-4S+3Fe-4S containing ferredoxins
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**[[1clf]] – Fd – ''Clostridium pasteurianum'' – NMR <br />
**[[1clf]] – Fd – ''Clostridium pasteurianum'' – NMR <br />
-
*Adrenoredoxin
+
*4Fe-4S+4Fe-Ni-4S containing ferredoxins
 +
 
 +
**[[9g03]] – Fd + CO dehydrogenase/AcCo synthase – ''Clostridium autoethanogenum'' – Cryo EM
 +
 
 +
*Adrenodoxin
 +
**[[3p1m]] - hADR - human<br />
 +
**[[7m8i]] – hADR/Cyp11B2 + fadrozole<br />
 +
**[[3na0]], [[3n9y]], [[3n9z]], [[3na1]] - hADR +cholesterol side-chain cleavage enzyme<br />
 +
**[[1cje]], [[1ayf]] - bADR - bovine <br />
 +
**[[2bt6]] – bADR1 modified <br />
 +
**[[1l6u]], [[1l6v]] – bADR1 – NMR <br />
 +
**[[1e6e]] – bADR (mutant)+ADR reductase <br />
**[[2mjd]], [[2mje]] – yADR – yeast<br />
**[[2mjd]], [[2mje]] – yADR – yeast<br />
**[[2jqr]] – yADR Fd domain (mutant)+cytochrome c (mutant) – NMR <br />
**[[2jqr]] – yADR Fd domain (mutant)+cytochrome c (mutant) – NMR <br />
-
**[[2bt6]] – cADR1 modified – cow <br />
 
-
**[[1l6u]], [[1l6v]] – cADR1 – NMR <br />
 
-
**[[1e6e]] – cADR (mutant)+ADR reductase <br />
 
-
**[[1cje]], [[1ayf]] - cADR <br />
 
-
**[[3na0]], [[3n9y]], [[3n9z]], [[3na1]] - hADR +cholesterol side-chain cleavage enzyme – human<br />
 
-
**[[3p1m]] - hADR<br />
 
**[[5uj5]] – ADR – ''Encephalitozoon cuniculi''<br />
**[[5uj5]] – ADR – ''Encephalitozoon cuniculi''<br />
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**[[1xln]], [[1xlo]], [[1xlp]], [[1xlq]], [[1r7s]], [[1oqq]], [[1oqr]] - PpPUT (mutant) <br />
**[[1xln]], [[1xlo]], [[1xlp]], [[1xlq]], [[1r7s]], [[1oqq]], [[1oqr]] - PpPUT (mutant) <br />
**[[1gpx]], [[1put]]- PpPUT (mutant) - NMR <br />
**[[1gpx]], [[1put]]- PpPUT (mutant) - NMR <br />
-
**[[4jws]] - PpPUT + cytochrome P450cam<br />
+
**[[4jws]], [[5gxg]] - PpPUT + cytochrome P450cam<br />
-
**[[3w9c]], [[4jwu]] - PpPUT (mutant) + cytochrome P450cam<br />
+
**[[3w9c]], [[4jwu]], [[6nbl]] - PpPUT (mutant) + cytochrome P450cam<br />
**[[2m56]] - PpPUT (mutant) + cytochrome P450cam - NMR<br />
**[[2m56]] - PpPUT (mutant) + cytochrome P450cam - NMR<br />
**[[4jx1]] - PpPUT (mutant) + cytochrome P450cam + camphor + hydroxycamphor<br />
**[[4jx1]] - PpPUT (mutant) + cytochrome P450cam + camphor + hydroxycamphor<br />

Current revision

3D structures of ferredoxin

Updated on 11-June-2025

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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