6pi5
From Proteopedia
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| - | '''Unreleased structure''' | ||
| - | The | + | ==The evolving story of AtzT, a periplasmic binding protein== |
| + | <StructureSection load='6pi5' size='340' side='right'caption='[[6pi5]], [[Resolution|resolution]] 1.67Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[6pi5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._ADP Pseudomonas sp. ADP]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PI5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6PI5 FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.67Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=GUN:GUANINE'>GUN</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6pi5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6pi5 OCA], [https://pdbe.org/6pi5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6pi5 RCSB], [https://www.ebi.ac.uk/pdbsum/6pi5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6pi5 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q936X6_PSESD Q936X6_PSESD] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Atrazine is an s-triazine-based herbicide that is used in many countries around the world in many millions of tons per year. A small number of organisms, such as Pseudomonas sp. strain ADP, have evolved to use this modified s-triazine as a food source, and the various genes required to metabolize atrazine can be found on a single plasmid. The atomic structures of seven of the eight proteins involved in the breakdown of atrazine by Pseudomonas sp. strain ADP have been determined by X-ray crystallography, but the structures of the proteins required by the cell to import atrazine for use as an energy source are still lacking. The structure of AtzT, a periplasmic binding protein that may be involved in the transport of a derivative of atrazine, 2-hydroxyatrazine, into the cell for mineralization, has now been determined. The structure was determined by SAD phasing using an ethylmercury phosphate derivative that diffracted X-rays to beyond 1.9 A resolution. `Native' (guanine-bound) and 2-hydroxyatrazine-bound structures were also determined to high resolution (1.67 and 1.65 A, respectively), showing that 2-hydroxyatrazine binds in a similar way to the purportedly native ligand. Structural similarities led to the belief that it may be possible to evolve AtzT from a purine-binding protein to a protein that can bind and detect atrazine in the environment. | ||
| - | + | The evolving story of AtzT, a periplasmic binding protein.,Dennis ML, Esquirol L, Nebl T, Newman J, Scott C, Peat TS Acta Crystallogr D Struct Biol. 2019 Nov 1;75(Pt 11):995-1002. doi:, 10.1107/S2059798319013883. Epub 2019 Oct 31. PMID:31692473<ref>PMID:31692473</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 6pi5" style="background-color:#fffaf0;"></div> |
| - | [[Category: | + | == References == |
| - | [[Category: | + | <references/> |
| - | [[Category: Nebl | + | __TOC__ |
| - | [[Category: | + | </StructureSection> |
| - | [[Category: Scott | + | [[Category: Large Structures]] |
| + | [[Category: Pseudomonas sp. ADP]] | ||
| + | [[Category: Dennis M]] | ||
| + | [[Category: Esquirol L]] | ||
| + | [[Category: Nebl T]] | ||
| + | [[Category: Newman J]] | ||
| + | [[Category: Peat TS]] | ||
| + | [[Category: Scott C]] | ||
Current revision
The evolving story of AtzT, a periplasmic binding protein
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Categories: Large Structures | Pseudomonas sp. ADP | Dennis M | Esquirol L | Nebl T | Newman J | Peat TS | Scott C
