6i9k

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:49, 24 January 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='6i9k' size='340' side='right'caption='[[6i9k]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
<StructureSection load='6i9k' size='340' side='right'caption='[[6i9k]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6i9k]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6I9K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6I9K FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6i9k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Hasarius_adansoni Hasarius adansoni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6I9K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6I9K FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.145&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6i9k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6i9k OCA], [http://pdbe.org/6i9k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6i9k RCSB], [http://www.ebi.ac.uk/pdbsum/6i9k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6i9k ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6i9k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6i9k OCA], [https://pdbe.org/6i9k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6i9k RCSB], [https://www.ebi.ac.uk/pdbsum/6i9k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6i9k ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/B1B1U5_9ARAC B1B1U5_9ARAC]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Light-sensitive G protein-coupled receptors (GPCRs)-rhodopsins-absorb photons to isomerize their covalently bound retinal, triggering conformational changes that result in downstream signaling cascades. Monostable rhodopsins release retinal upon isomerization as opposed to the retinal in bistable rhodopsins that "reisomerize" upon absorption of a second photon. Understanding the mechanistic differences between these light-sensitive GPCRs has been hindered by the scarcity of recombinant models of the latter. Here, we reveal the high-resolution crystal structure of a recombinant bistable rhodopsin, jumping spider rhodopsin-1, bound to the inverse agonist 9-cis retinal. We observe a water-mediated network around the ligand hinting toward the basis of their bistable nature. In contrast to bovine rhodopsin (monostable), the transmembrane bundle of jumping spider rhodopsin-1 as well that of the bistable squid rhodopsin adopts a more "activation-ready" conformation often observed in other nonphotosensitive class A GPCRs. These similarities suggest the role of jumping spider rhodopsin-1 as a potential model system in the study of the structure-function relationship of both photosensitive and nonphotosensitive class A GPCRs.
 +
 +
Crystal structure of jumping spider rhodopsin-1 as a light sensitive GPCR.,Varma N, Mutt E, Muhle J, Panneels V, Terakita A, Deupi X, Nogly P, Schertler GFX, Lesca E Proc Natl Acad Sci U S A. 2019 Jun 27. pii: 1902192116. doi:, 10.1073/pnas.1902192116. PMID:31249143<ref>PMID:31249143</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 6i9k" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Rhodopsin 3D structures|Rhodopsin 3D structures]]
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Hasarius adansoni]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Deupi, X]]
+
[[Category: Deupi X]]
-
[[Category: Lesca, E]]
+
[[Category: Lesca E]]
-
[[Category: Muehle, J]]
+
[[Category: Muehle J]]
-
[[Category: Mutt, E]]
+
[[Category: Mutt E]]
-
[[Category: Nogly, P]]
+
[[Category: Nogly P]]
-
[[Category: Panneels, V]]
+
[[Category: Panneels V]]
-
[[Category: Schertler, F X.G]]
+
[[Category: Schertler FXG]]
-
[[Category: Terakita, A]]
+
[[Category: Terakita A]]
-
[[Category: Varma, N]]
+
[[Category: Varma N]]
-
[[Category: Gpcr]]
+
-
[[Category: Light-sensitive]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: Retinal]]
+
-
[[Category: Rhodopsin]]
+

Current revision

Crystal structure of Jumping Spider Rhodopsin-1 bound to 9-cis retinal

PDB ID 6i9k

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools