This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6rdj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:10, 22 May 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 1A, focussed refinement of F1 head and rotor==
==Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 1A, focussed refinement of F1 head and rotor==
-
<StructureSection load='6rdj' size='340' side='right'caption='[[6rdj]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
+
<SX load='6rdj' size='340' side='right' viewer='molstar' caption='[[6rdj]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6rdj]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Polytomella_sp._pringsheim_198.80 Polytomella sp. pringsheim 198.80]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RDJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RDJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6rdj]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Polytomella_sp._Pringsheim_198.80 Polytomella sp. Pringsheim 198.80]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RDJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RDJ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=7.1.2.2 7.1.2.2] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6rdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rdj OCA], [http://pdbe.org/6rdj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rdj RCSB], [http://www.ebi.ac.uk/pdbsum/6rdj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rdj ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6rdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rdj OCA], [https://pdbe.org/6rdj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6rdj RCSB], [https://www.ebi.ac.uk/pdbsum/6rdj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6rdj ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/A0ZW40_9CHLO A0ZW40_9CHLO]] Produces ATP from ADP in the presence of a proton gradient across the membrane.[RuleBase:RU003551] [[http://www.uniprot.org/uniprot/A0ZW41_9CHLO A0ZW41_9CHLO]] Produces ATP from ADP in the presence of a proton gradient across the membrane.[RuleBase:RU003553]
+
[https://www.uniprot.org/uniprot/D7P7X6_9CHLO D7P7X6_9CHLO]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 6rdj" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6rdj" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[ATPase 3D structures|ATPase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
-
</StructureSection>
+
</SX>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Polytomella sp. pringsheim 198 80]]
+
[[Category: Polytomella sp. Pringsheim 198 80]]
-
[[Category: Klusch, N]]
+
[[Category: Klusch N]]
-
[[Category: Kuhlbrandt, W]]
+
[[Category: Kuhlbrandt W]]
-
[[Category: Murphy, B J]]
+
[[Category: Murphy BJ]]
-
[[Category: Yildiz, O]]
+
[[Category: Yildiz O]]
-
[[Category: Mitochondrial atp synthase dimer flexible coupling cryoem]]
+
-
[[Category: Proton transport]]
+

Current revision

Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 1A, focussed refinement of F1 head and rotor

6rdj, resolution 2.90Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6rdj"
Personal tools