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| | ==Solution structure of ascidian trypsin inhibitor== | | ==Solution structure of ascidian trypsin inhibitor== |
| - | <StructureSection load='1iw4' size='340' side='right'caption='[[1iw4]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='1iw4' size='340' side='right'caption='[[1iw4]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[1iw4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cynthia_roretzi Cynthia roretzi]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IW4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IW4 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1iw4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halocynthia_roretzi Halocynthia roretzi]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IW4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IW4 FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iw4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iw4 OCA], [http://pdbe.org/1iw4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1iw4 RCSB], [http://www.ebi.ac.uk/pdbsum/1iw4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1iw4 ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr> |
| | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1iw4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iw4 OCA], [https://pdbe.org/1iw4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1iw4 RCSB], [https://www.ebi.ac.uk/pdbsum/1iw4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1iw4 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/ITRP_HALRO ITRP_HALRO]] Potent inhibitor of trypsin. | + | [https://www.uniprot.org/uniprot/ITRP_HALRO ITRP_HALRO] Potent inhibitor of trypsin. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | ==See Also== | | ==See Also== |
| - | *[[NMR Ensembles of Models|NMR Ensembles of Models]]
| + | *[[Trypsin inhibitor 3D structures|Trypsin inhibitor 3D structures]] |
| - | *[[Trypsin inhibitor|Trypsin inhibitor]] | + | |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Cynthia roretzi]] | + | [[Category: Halocynthia roretzi]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Hasegawa, J]] | + | [[Category: Hasegawa J]] |
| - | [[Category: Hemmi, H]] | + | [[Category: Hemmi H]] |
| - | [[Category: Kobayashi, Y]] | + | [[Category: Kobayashi Y]] |
| - | [[Category: Kumazaki, T]] | + | [[Category: Kumazaki T]] |
| - | [[Category: Kyogoku, Y]] | + | [[Category: Kyogoku Y]] |
| - | [[Category: Nemoto, N]] | + | [[Category: Nemoto N]] |
| - | [[Category: Nishioka, F]] | + | [[Category: Nishioka F]] |
| - | [[Category: Yokosawa, H]] | + | [[Category: Yokosawa H]] |
| - | [[Category: Yoshida, T]] | + | [[Category: Yoshida T]] |
| - | [[Category: Ascidian]]
| + | |
| - | [[Category: Cystine-stabilized alpha-helical motif]]
| + | |
| - | [[Category: Disulfide bond]]
| + | |
| - | [[Category: Kazal-type inhibitor]]
| + | |
| - | [[Category: Protein binding]]
| + | |
| - | [[Category: Solution structure]]
| + | |
| - | [[Category: Trypsin inhibitor]]
| + | |
| Structural highlights
Function
ITRP_HALRO Potent inhibitor of trypsin.
Publication Abstract from PubMed
The three-dimensional solution structure of ascidian trypsin inhibitor (ATI), a 55 amino acid residue protein with four disulfide bridges, was determined by means of two-dimensional nuclear magnetic resonance (2D NMR) spectroscopy. The resulting structure of ATI was characterized by an alpha-helical conformation in residues 35-42 and a three-stranded antiparallel beta-sheet in residues 22-26, 29-32, and 48-50. The presence of an alpha-helical conformation was predicted from the consensus sequences of the cystine-stabilized alpha-helical (CSH) motif, which is characterized by an alpha-helix structure in the Cys-X(1)-X(2)-X(3)-Cys portion (corresponding to residues 37-41), linking to the Cys-X-Cys portion (corresponding to residues 12-14) folded in an extended structure. The secondary structure and the overall folding of the main chain of ATI were very similar to those of the Kazal-type inhibitors, such as Japanese quail ovomucoid third domain (OMJPQ3) and leech-derived tryptase inhibitor form C (LDTI-C), although ATI does not show extensive sequence homology to these inhibitors except for a few amino acid residues and six of eight half-cystines. On the basis of these findings, we realign the amino acid sequences of representative Kazal-type inhibitors including ATI and discuss the unique structure of ATI with four disulfide bridges.
Solution structure of ascidian trypsin inhibitor determined by nuclear magnetic resonance spectroscopy.,Hemmi H, Yoshida T, Kumazaki T, Nemoto N, Hasegawa J, Nishioka F, Kyogoku Y, Yokosawa H, Kobayashi Y Biochemistry. 2002 Aug 27;41(34):10657-64. PMID:12186551[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Hemmi H, Yoshida T, Kumazaki T, Nemoto N, Hasegawa J, Nishioka F, Kyogoku Y, Yokosawa H, Kobayashi Y. Solution structure of ascidian trypsin inhibitor determined by nuclear magnetic resonance spectroscopy. Biochemistry. 2002 Aug 27;41(34):10657-64. PMID:12186551
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