Glyceraldehyde-3-phosphate dehydrogenase 3D structures

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(New page: ==3D structures of glyceraldehyde-3-phosphate dehydrogenase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Apo ...)
Current revision (09:35, 21 July 2025) (edit) (undo)
 
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*Apo GAPDH
*Apo GAPDH
-
**[[5c7l]] - hGAPDH – human<br />
+
**[[5c7l]], [[6iq6]], [[6ynd]], [[6yne]], [[6ynf]], [[6ynh]], [[8p5f]] - hGAPDH – human<br />
 +
**[[8g13]], [[8g14]], [[8g17]] - hGAPDH (cystolic) – Cryo EM<br />
 +
**[[8dns]] - hGAPDH (brain) – Cryo EM<br />
 +
**[[8g12]], [[8g15]] - hGAPDH (nuclear) – Cryo EM<br />
 +
**[[8g16]] - hGAPDH (cystoplasmic) – Cryo EM<br />
**[[5c7i]] - mGAPDH – mouse<br />
**[[5c7i]] - mGAPDH – mouse<br />
**[[4gpd]], [[1crw]] – AlGAPDH – American lobster<br />
**[[4gpd]], [[1crw]] – AlGAPDH – American lobster<br />
-
**[[2hki]] – sGAPDH – spinach<br />
+
**[[2hki]] – sGAPDH A – spinach<br />
**[[3e6a]] – RiGAPDH ligand binding domain – rice<br />
**[[3e6a]] – RiGAPDH ligand binding domain – rice<br />
**[[4iq8]] - GAPDH – yeast<br />
**[[4iq8]] - GAPDH – yeast<br />
**[[1vsu]] – CpGAPDH – ''Cryptosporidium parvum''<br />
**[[1vsu]] – CpGAPDH – ''Cryptosporidium parvum''<br />
-
**[[1dc5]], [[1s7c]], [[5o0v]], [[6io4]] - EcGAPDH – ''Escherichia coli''<br />
+
**[[8pvf]] - CpGAPDH – Cryo EM<br />
 +
**[[1dc5]], [[1s7c]], [[5o0v]], [[6utm]], [[6utn]], [[6uto]], [[8jzj]] - EcGAPDH – ''Escherichia coli''<br />
**[[6io4]], [[6io6]], [[6ioj]] - EcGAPDH (mutant) <br />
**[[6io4]], [[6io6]], [[6ioj]] - EcGAPDH (mutant) <br />
**[[1euh]], [[1qi6]] - SmGAPDH – ''Streptococcus mutans''<br />
**[[1euh]], [[1qi6]] - SmGAPDH – ''Streptococcus mutans''<br />
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**[[5v8y]], [[5v8x]] - SagGAPDH (mutant) <br />
**[[5v8y]], [[5v8x]] - SagGAPDH (mutant) <br />
**[[6iqv]] - LpGAPDH – ''Lactobacillus plantarum''<br />
**[[6iqv]] - LpGAPDH – ''Lactobacillus plantarum''<br />
 +
**[[7d1g]] - GAPDH – ''Clostridium beijerinckii''<br />
 +
**[[7jh0]] - GAPDH – ''Schistosoma mansoni''<br />
 +
**[[7u4s]] - CaGAPDH – ''Candida albicans''<br />
 +
**[[8i7e]] - GAPDH – ''Salmonella enterica''<br />
 +
**[[8wwz]] - GAPDH 2 – ''Bacillus subtilis''<br />
*NAD-dependent GAPDH with cofactor NAD
*NAD-dependent GAPDH with cofactor NAD
Line 32: Line 42:
**[[3gpd]], [[1znq]], [[1u8f]], [[5c7o]], [[4wnc]], [[3pfw]] - hGAPDH + NAD <br />
**[[3gpd]], [[1znq]], [[1u8f]], [[5c7o]], [[4wnc]], [[3pfw]] - hGAPDH + NAD <br />
**[[4wni]], [[6ade]] - hGAPDH (mutant) + NAD<br />
**[[4wni]], [[6ade]] - hGAPDH (mutant) + NAD<br />
 +
**[[6m61]] - hGAPDH + NAD + inhibitor<br />
**[[5ddi]] - pGAPDH + NAD – pig<br />
**[[5ddi]] - pGAPDH + NAD – pig<br />
**[[4o63]], [[4o59]] - bGAPDH + NAD – bovine<br />
**[[4o63]], [[4o59]] - bGAPDH + NAD – bovine<br />
 +
**[[7u5m]] - bGAPDH + NAD – Cryo EM<br />
**[[1j0x]] - GAPDH + NAD – rabbit<br />
**[[1j0x]] - GAPDH + NAD – rabbit<br />
**[[2vyn]], [[2vyv]] - GAPDH + NAD - rat<br />
**[[2vyn]], [[2vyv]] - GAPDH + NAD - rat<br />
 +
**[[6lgj]] - mGAPDH + NAD <br />
 +
**[[6lgk]] - mGAPDH (mutant) + NAD <br />
 +
**[[6lgm]] - mGAPDH + NAD + inhibitor<br />
**[[1ihx]] – scsGAPDH + NAD derivative – South China Sea lobster<br />
**[[1ihx]] – scsGAPDH + NAD derivative – South China Sea lobster<br />
**[[1gpd]], [[1szj]], [[1dss]] – AlGAPDH + NAD <br />
**[[1gpd]], [[1szj]], [[1dss]] – AlGAPDH + NAD <br />
-
**[[1nbo]] - sGAPDH + NAD<br />
+
**[[1nbo]] - sGAPDH A + NAD<br />
 +
**[[7q53]], [[7q54]], [[7q55]], [[7q56]], [[7q57]] - sGAPDH A + sGAPDH B + NAD – Cryo EM<br />
 +
**[[6px2]] - GAPDH + NAD – coral<br />
 +
**[[3k2b]], [[4z0h]], [[3rvd]], [[6qun]], [[6quq]] - AtGAPDH + NAD – ''Arabidopsis thaliana''<br />
 +
**[[6kez]] - AtGAPDH + NAD + phophoribulokinase + CP12-2<br />
**[[3pym]] - yGAPDH + NAD <br />
**[[3pym]] - yGAPDH + NAD <br />
**[[1vsv]], [[3cps]] – CpGAPDH + NAD<br />
**[[1vsv]], [[3cps]] – CpGAPDH + NAD<br />
Line 47: Line 66:
**[[1gyq]] - LmGAPDH + benzyl-NAD<br />
**[[1gyq]] - LmGAPDH + benzyl-NAD<br />
**[[1cer]], [[2g82]] - GAPDH + NAD – ''Thermus aquaticus''<br />
**[[1cer]], [[2g82]] - GAPDH + NAD – ''Thermus aquaticus''<br />
-
**[[1gad]], [[1dc6]], [[4mvj]] - EcGAPDH + NAD<br />
+
**[[1gad]], [[1dc6]], [[4mvj]], [[7c5f]], [[7c5g]], [[7c5h]], [[7c5l]] - EcGAPDH + NAD<br />
-
**[[1gae]] - EcGAPDH (mutant) + NAD<br />
+
**[[1gae]], [[7c5i]], [[7c5j]], [[7c5n]], [[7c5o]] - EcGAPDH (mutant) + NAD<br />
**[[2ep7]] – GAPDH + NAD – ''Aquifex aeolicus''<br />
**[[2ep7]] – GAPDH + NAD – ''Aquifex aeolicus''<br />
**[[2b4r]], [[1ywg]] - PfGAPDH + NAD – ''Plasmodium falciparum''<br />
**[[2b4r]], [[1ywg]] - PfGAPDH + NAD – ''Plasmodium falciparum''<br />
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**[[2x0n]] – TbGAPDH + NAD – ''Trypanosoma brucei'' – Laue<br />
**[[2x0n]] – TbGAPDH + NAD – ''Trypanosoma brucei'' – Laue<br />
**[[4p8r]] - TbGAPDH + NAD<br />
**[[4p8r]] - TbGAPDH + NAD<br />
-
**[[3k2b]], [[4z0h]], [[3rvd]] - GAPDH + NAD – ''Arabidopsis thaliana''<br />
 
**[[3hq4]], [[3k9q]], [[3ksd]], [[3lc1]], [[3kv3]] - SaGAPDH (mutant) + NAD<br />
**[[3hq4]], [[3k9q]], [[3ksd]], [[3lc1]], [[3kv3]] - SaGAPDH (mutant) + NAD<br />
**[[3lvf]], [[3vaz]] - SaGAPDH + NAD<br />
**[[3lvf]], [[3vaz]] - SaGAPDH + NAD<br />
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**[[5ld5]] - GAPDH + NAD – ''Atopobium vaginae''<br />
**[[5ld5]] - GAPDH + NAD – ''Atopobium vaginae''<br />
**[[4lsm]] - TcGAPDH + NAD – ''Trypanosoma cruzi''<br />
**[[4lsm]] - TcGAPDH + NAD – ''Trypanosoma cruzi''<br />
-
**[[6ok4]] - GAPDH + NAD – ''Chlamydia trachomatis''<br />
+
**[[6ok4]], [[6wyc]], [[6x2e]] - GAPDH + NAD – ''Chlamydia trachomatis''<br />
**[[6nlx]] - GAPDH + NAD – ''Naegleria fowleri''<br />
**[[6nlx]] - GAPDH + NAD – ''Naegleria fowleri''<br />
-
**[[6iqm]] - LpGAPDH + NAD<br />
+
**[[6iqm]], [[8hmn]] - LpGAPDH + NAD<br />
**[[6fzi]] - GAPDH + NAD – ''Clostridium perfringens''<br />
**[[6fzi]] - GAPDH + NAD – ''Clostridium perfringens''<br />
-
**[[6fzh]] - GAPDH + NAD – ''Streptococcus pyogenes''<br />
+
**[[6fzh]], [[6ite]] - SpGAPDH + NAD – ''Streptococcus pyogenes''<br />
-
**[[6dfz]] - GAPDH + NAD – ''Acropora millepora''<br />
+
**[[6px2]] - GAPDH + NAD – ''Acropora millepora''<br />
 +
**[[7jwk]] - GAPDH + NAD – ''Mycoplasma genitalium''<br />
 +
**[[7xzg]] - CaGAPDH + NAD <br />
 +
**[[8hro]], [[8hrq]] - CgGAPDH + NAD – ''Corynebacterium glutamicum''<br />
 +
**[[9pg6]], [[9pgq]] - GAPDH + NAD – ''Bordetella pertussis''<br />
 +
**[[7www]] - GAPDH + NAD – ''Lactobacillus gasseri''<br />
 +
**[[7zqk]] - CrGAPDH A + NAD – ''Chlamydomonas reinhardtii''<br />
 +
**[[8br4]] - GAPDH + NAD – ''Mycobacterium tuberculosis''<br />
 +
**[[8oha]] - GAPDH + NAD – ''Leptospira interrogans''<br />
*NAD-dependent GAPDH ternary complexes containing glyceraldehyde-3-phosphate (G3P)
*NAD-dependent GAPDH ternary complexes containing glyceraldehyde-3-phosphate (G3P)
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**[[1nqo]], [[1nqa]] - GsGAPDH (mutant) + NAD + G3P<br />
**[[1nqo]], [[1nqa]] - GsGAPDH (mutant) + NAD + G3P<br />
**[[1dc4]], [[1dc3]] - EcGAPDH + G3P<br />
**[[1dc4]], [[1dc3]] - EcGAPDH + G3P<br />
 +
**[[7c5m]], [[7c5p]] - EcGAPDH + NAD + G3P <br />
 +
**[[7c5k]], [[7c5q]] - EcGAPDH (mutant) + NAD + G3P<br />
 +
**[[7c5r]] - EcGAPDH + NAD + G3P + BPG<br />
 +
**[[8hrp]] - CgGAPDH + NAD + G3P <br />
*Other NAD-dependent GAPDH ternary complexes
*Other NAD-dependent GAPDH ternary complexes
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**[[6gfp]] - SeGAPDH + NAD + NADP <br />
**[[6gfp]] - SeGAPDH + NAD + NADP <br />
**[[6gve]] - SeGAPDH + NAD + CP12 + phosphoribulokinase<br />
**[[6gve]] - SeGAPDH + NAD + CP12 + phosphoribulokinase<br />
 +
**[[6kev]] - SeGAPDH + ATP + G6P <br />
 +
**[[8zoz]] - GAPDH B + AMP – ''Acinetobacter baumannii''<br />
**[[3qv1]] - AtGAPDH + NAD + CP12 <br />
**[[3qv1]] - AtGAPDH + NAD + CP12 <br />
**[[1i33]], [[1i32]] - LmGAPDH + inhibitor<br />
**[[1i33]], [[1i32]] - LmGAPDH + inhibitor<br />
**[[5za0]] – EcGAPDH-A + trehalose<br />
**[[5za0]] – EcGAPDH-A + trehalose<br />
 +
**[[8de5]] - GAPDH + NAD + galactonate – ''Paracoccidioides lutzi''<br />
*NADP-dependent GAPDH
*NADP-dependent GAPDH
**[[2duu]], [[2d2i]] - SeGAPDH <br />
**[[2duu]], [[2d2i]] - SeGAPDH <br />
 +
**[[9fl1]], [[9fod]], [[9fq4]] - HpGAPDH – ''Helicobacter pylori''<br />
*NADP-dependent GAPDH with cofactor NADP
*NADP-dependent GAPDH with cofactor NADP
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**[[1ky8]], [[1uxn]] - TtGAPDH + NADP – ''Thermoproteus tenax''<br />
**[[1ky8]], [[1uxn]] - TtGAPDH + NADP – ''Thermoproteus tenax''<br />
**[[3rhh]] - BhGAPDH + NADP<br />
**[[3rhh]] - BhGAPDH + NADP<br />
 +
**[[7zq3]], [[7zq4]] - CrGAPDH A + NADP <br />
 +
**[[8jb1]] - CgGAPDH + NADP <br />
 +
**[[8hrr]], [[8hrs]], [[8hrt]] - CgGAPDH (mutant) + NADP <br />
 +
**[[9fob]] - HpGAPDH + NADP <br />
*NADP-dependent GAPDH ternary complexes containing glyceraldehyde-3-phosphate (G3P)
*NADP-dependent GAPDH ternary complexes containing glyceraldehyde-3-phosphate (G3P)
Line 135: Line 173:
**[[1uxq]] - TtGAPDH (mutant) + NADP + G1P<br />
**[[1uxq]] - TtGAPDH (mutant) + NADP + G1P<br />
**[[1uxr]] - TtGAPDH (mutant) + NADP + F6P<br />
**[[1uxr]] - TtGAPDH (mutant) + NADP + F6P<br />
 +
**[[8qhn]] - SpGAPDH + NADP + erythrose -4-glucose<br />
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

3D structures of glyceraldehyde-3-phosphate dehydrogenase

Updated on 21-July-2025

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman

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