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| <StructureSection load='2ycd' size='340' side='right'caption='[[2ycd]], [[Resolution|resolution]] 1.40Å' scene=''> | | <StructureSection load='2ycd' size='340' side='right'caption='[[2ycd]], [[Resolution|resolution]] 1.40Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[2ycd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_radiobacter"_(beijerinck_and_van_delden_1902)_bergey_et_al._1934 "achromobacter radiobacter" (beijerinck and van delden 1902) bergey et al. 1934]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YCD FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2ycd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YCD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YCD FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GTB:S-(P-NITROBENZYL)GLUTATHIONE'>GTB</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4Å</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ycd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ycd OCA], [http://pdbe.org/2ycd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ycd RCSB], [http://www.ebi.ac.uk/pdbsum/2ycd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ycd ProSAT]</span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GTB:S-(P-NITROBENZYL)GLUTATHIONE'>GTB</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ycd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ycd OCA], [https://pdbe.org/2ycd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ycd RCSB], [https://www.ebi.ac.uk/pdbsum/2ycd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ycd ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/A9CFJ9_AGRFC A9CFJ9_AGRFC] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
| + | [[Category: Agrobacterium tumefaciens]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Dhavala, P]] | + | [[Category: Dhavala P]] |
- | [[Category: Labrou, N E]] | + | [[Category: Labrou NE]] |
- | [[Category: Papageorgiou, A C]] | + | [[Category: Papageorgiou AC]] |
- | [[Category: Skopelitou, K]] | + | [[Category: Skopelitou K]] |
- | [[Category: Herbicide detoxification]]
| + | |
- | [[Category: Soil bacteria]]
| + | |
- | [[Category: Transferase]]
| + | |
| Structural highlights
Function
A9CFJ9_AGRFC
Publication Abstract from PubMed
In the present work, we report a novel class of glutathione transferases (GSTs) originated from the pathogenic soil bacterium Agrobacterium tumefaciens C58, with structural and catalytic properties not observed previously in prokaryotic and eukaryotic GST isoenzymes. A GST-like sequence from A. tumefaciens C58 (Atu3701) with low similarity to other characterized GST family of enzymes was identified. Phylogenetic analysis showed that it belongs to a distinct GST class not previously described and restricted only in soil bacteria, called the Eta class (H). This enzyme (designated as AtuGSTH1-1) was cloned and expressed in E. coli and its structural and catalytic properties were investigated. Functional analysis showed that AtuGSTH1-1 exhibits significant transferase activity against the common substrates aryl halides, as well as very high peroxidase activity towards organic hydroperoxides. The crystal structure of AtuGSTH1-1 was determined at 1.4 A resolution in complex with S-(p-nitrobenzyl)-glutathione (Nb-GSH). Although AtuGSTH1-1 adopts the canonical GST fold, sequence and structural characteristics distinct from previously characterized GSTs were identified. The absence of the classic catalytic essential residues (Tyr, Ser, Cys) distinguishes AtuGSTH1-1 from all other cytosolic GSTs of known structure and function. Site-directed mutagenesis showed that instead of the classic catalytic residues, an Arg residue (Arg34), an electron-sharing network, and a bridge of a network of water molecules may form the basis of the catalytic mechanism. Comparative sequence analysis, structural information, and site-directed mutagenesis in combination with kinetic analysis showed that Phe22, Ser25, and Arg187 are additional important residues for the enzyme's catalytic efficiency and specificity.
A Glutathione Transferase from Agrobacterium tumefaciens Reveals a Novel Class of Bacterial GST Superfamily.,Skopelitou K, Dhavala P, Papageorgiou AC, Labrou NE PLoS One. 2012;7(3):e34263. Epub 2012 Apr 4. PMID:22496785[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Skopelitou K, Dhavala P, Papageorgiou AC, Labrou NE. A Glutathione Transferase from Agrobacterium tumefaciens Reveals a Novel Class of Bacterial GST Superfamily. PLoS One. 2012;7(3):e34263. Epub 2012 Apr 4. PMID:22496785 doi:10.1371/journal.pone.0034263
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