This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.

Template:STRUCTURE 1cdw

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Current revision

1cdw, resolution 1.90Å ()

Structural annotation:
Resources:	CATH : 1Cdwa02, 1Cdwa01 InterPro : Ipr012295, Ipr012294, Ipr000814 Pfam : PF00352 SCOP : d1cdwa1, d1cdwa2 UniProt : P20226

Functional annotation:
Cellular component:	nucleus transcription factor TFIID complex
Biological process:	transcription initiation from RNA polymerase II promoter transcription cell death transcription from RNA polymerase II promoter regulation of transcription, DNA-dependent
Molecular function:	general RNA polymerase II transcription factor activity binding DNA binding protein binding RNA polymerase II transcription factor activity

Evolutionary conservation:

Toggle Conservation Colors:

Rows = identical sequences:

Further Information:

Caveats,

Explanation,
Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, RCSB, PDBsum

Coordinates:

save as pdb, mmCIF, xml

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_1cdw"

@@ Line 1: / Line 1: @@
 {{Structure
-|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 1cdw, resolution 1.900&Aring; (<scene name='initialview01'>initial scene</scene>)
+|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1cdw]], [[Resolution|resolution]] 1.90&Aring; (<scene name='initialview01'>default scene</scene>)}}}
-|SITE=
+|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cdw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cdw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1cdw RCSB], [http://www.ebi.ac.uk/pdbsum/1cdw PDBsum]</span>
-|LIGAND= <scene name='pdbligand=DA:2&#39;-DEOXYADENOSINE-5&#39;-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DC:2&#39;-DEOXYCYTIDINE-5&#39;-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2&#39;-DEOXYGUANOSINE-5&#39;-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5&#39;-MONOPHOSPHATE'>DT</scene>
+|FUNCTION={{GO|id=GO:0016251 | text = general RNA polymerase II transcription factor activity}}{{GO|id=GO:0005488 | text = binding}}{{GO|id=GO:0003677 | text = DNA binding}}{{GO|id=GO:0005515 | text = protein binding}}{{GO|id=GO:0003702 | text = RNA polymerase II transcription factor activity}}
-|ACTIVITY=
+|PROCESS={{GO|id=GO:0006367 | text = transcription initiation from RNA polymerase II promoter}}{{GO|id=GO:0006350 | text = transcription}}{{GO|id=GO:0008219 | text = cell death}}{{GO|id=GO:0006366 | text = transcription from RNA polymerase II promoter}}{{GO|id=GO:0006355 | text = regulation of transcription, DNA-dependent}}
-|GENE=
+|COMPONENT={{GO|id=GO:0005634 | text = nucleus}}{{GO|id=GO:0005669 | text = transcription factor TFIID complex}}
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04516 TBP_eukaryotes], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG2101 SPT15]</span>
+|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1cdwA02 1Cdwa02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1cdwA01 1Cdwa01]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012295 Ipr012295], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012294 Ipr012294], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000814 Ipr000814]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00352 PF00352]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=41212 d1cdwa1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=41213 d1cdwa2]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P20226 P20226]</span>
-|RELATEDENTRY=
+|uPDB=1CDW|CONSURF={{!}}-
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cdw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cdw OCA], [http://www.ebi.ac.uk/pdbsum/1cdw PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1cdw RCSB]</span>
+{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
+{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
+{{!}} '''Toggle Conservation Colors:'''
+{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
+Rows = identical sequences:
+<jmol>
+<jmolButton>
+<script></script>
+<text>B [x]</text>
+<name>jmb_1cdw_B</name>
+<title>toggle chain B</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>C [x]</text>
+<name>jmb_1cdw_C</name>
+<title>toggle chain C</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>A [x]</text>
+<name>jmb_1cdw_A</name>
+<title>toggle chain A</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
 }}

Template:STRUCTURE 1cdw

From Proteopedia

Current revision

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox